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通过生物信息学分析鉴定奶牛应对乳腺炎的关键候选基因

Identification of Key Candidate Genes in Dairy Cow in Response to Mastitis by Bioinformatical Analysis.

作者信息

Li Liabin, Chen Xiuli, Chen Zeshi

机构信息

Key Laboratory of Tropical Animal Breeding and Epidemic Disease Research of Hainan Province, College of Animal Science and Technology, Hainan University, Haikou, China.

Animal Disease Prevention and Control Center of Hanzhong, Hanzhong, China.

出版信息

Front Genet. 2019 Dec 6;10:1251. doi: 10.3389/fgene.2019.01251. eCollection 2019.

Abstract

At present, bovine mastitis is one of the most costly diseases affecting animal health and welfare. () is considered to be one of the main pathogens causing mastitis with clinical signs in dairy cattle. However, the cure rate of mastitis is low, and the pathogenesis of mastitis is not completely known. In order to develop new strategies for the rapid detection of mastitis, a comprehensive molecular investigation of mastitis is necessary. Hence, this study integrated three microarray data sets to identify the potential key candidate genes in dairy cow in response to mastitis. Differentially expressed genes (DEGs) were screened in mammary gland tissues with live infection. Furthermore, the pathways enrichment of DEGs were analyzed, and the protein-protein interaction (PPI) network was performed. In total, 105 shared DEGs were identified from the three data sets. The DEGs were significantly enriched in biological processes mainly involved in immunity. The PPI network of DEGs was constructed with 102 nodes and 546 edges. The module with the highest score through MCODE analysis was filtered from PPI; 18 central node genes were identified. However, in addition to immune-related pathways, some of the 18 DEGs were involved in signaling pathways triggered by other diseases. Considering the specificity of biomarkers for rapid detection, , and were identified as the most potential biomarker for mastitis. In conclusion, the novel DEGs and pathways identified in this study can help to improve the diagnosis and treatment strategies for mastitis in cattle.

摘要

目前,牛乳腺炎是影响动物健康和福利的最昂贵疾病之一。()被认为是导致奶牛出现临床症状的乳腺炎的主要病原体之一。然而,乳腺炎的治愈率较低,其发病机制也尚未完全明确。为了开发乳腺炎快速检测的新策略,有必要对乳腺炎进行全面的分子研究。因此,本研究整合了三个微阵列数据集,以鉴定奶牛应对乳腺炎时潜在的关键候选基因。在有活(感染)的乳腺组织中筛选差异表达基因(DEG)。此外,分析了DEG的通路富集情况,并构建了蛋白质-蛋白质相互作用(PPI)网络。总共从三个数据集中鉴定出105个共享的DEG。这些DEG在主要涉及免疫的生物学过程中显著富集。DEG的PPI网络由102个节点和546条边构成。通过MCODE分析从PPI中筛选出得分最高的模块;鉴定出18个中心节点基因。然而,除了免疫相关通路外,这18个DEG中的一些还参与了由其他疾病触发的信号通路。考虑到用于快速检测的生物标志物的特异性,()和()被鉴定为乳腺炎最具潜力的生物标志物。总之,本研究中鉴定出的新DEG和通路有助于改善牛乳腺炎的诊断和治疗策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/834a/6915111/283e8867539c/fgene-10-01251-g001.jpg

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