Zhukovsky Mikhail A, Filograna Angela, Luini Alberto, Corda Daniela, Valente Carmen
Institute of Biochemistry and Cell Biology, National Research Council, Naples, Italy.
Front Cell Dev Biol. 2019 Dec 10;7:291. doi: 10.3389/fcell.2019.00291. eCollection 2019.
One of the fundamental features of biomembranes is the ability to fuse or to separate. These processes called respectively membrane fusion and fission are central in the homeostasis of events such as those related to intracellular membrane traffic. Proteins that contain amphipathic helices (AHs) were suggested to mediate membrane fission via shallow insertion of these helices into the lipid bilayer. Here we analyze the AH-containing proteins that have been identified as essential for membrane fission and categorize them in few subfamilies, including small GTPases, Atg proteins, and proteins containing either the ENTH/ANTH- or the BAR-domain. AH-containing fission-inducing proteins may require cofactors such as additional proteins (e.g., lipid-modifying enzymes), or lipids (e.g., phosphatidylinositol 4,5-bisphosphate [PtdIns(4,5)P], phosphatidic acid [PA], or cardiolipin). Both PA and cardiolipin possess a cone shape and a negative charge (-2) that favor the recruitment of the AHs of fission-inducing proteins. Instead, PtdIns(4,5)P is characterized by an high negative charge able to recruit basic residues of the AHs of fission-inducing proteins. Here we propose that the AHs of fission-inducing proteins contain sequence motifs that bind lipid cofactors; accordingly (K/R/H)(K/R/H)xx(K/R/H) is a PtdIns(4,5)P-binding motif, (K/R)x(F/Y) is a cardiolipin-binding motif, whereas KxK is a PA-binding motif. Following our analysis, we show that the AHs of many fission-inducing proteins possess five properties: (a) at least three basic residues on the hydrophilic side, (b) ability to oligomerize, (c) optimal (shallow) depth of insertion into the membrane, (d) positive cooperativity in membrane curvature generation, and (e) specific interaction with one of the lipids mentioned above. These lipid cofactors favor correct conformation, oligomeric state and optimal insertion depth. The most abundant lipid in a given organelle possessing high negative charge (more negative than -1) is usually the lipid cofactor in the fission event. Interestingly, naturally occurring mutations have been reported in AH-containing fission-inducing proteins and related to diseases such as centronuclear myopathy (amphiphysin 2), Charcot-Marie-Tooth disease (GDAP1), Parkinson's disease (α-synuclein). These findings add to the interest of the membrane fission process whose complete understanding will be instrumental for the elucidation of the pathogenesis of diseases involving mutations in the protein AHs.
生物膜的一个基本特征是具有融合或分离的能力。这两个过程分别称为膜融合和膜裂变,是细胞内膜运输等事件稳态的核心。含有两亲性螺旋(AHs)的蛋白质被认为可通过这些螺旋浅插入脂质双层来介导膜裂变。在这里,我们分析了已被确定为膜裂变所必需的含AHs蛋白质,并将它们归类为几个亚家族,包括小GTP酶、自噬蛋白以及含有ENTH/ANTH结构域或BAR结构域的蛋白质。含AHs的裂变诱导蛋白可能需要辅因子,如其他蛋白质(如脂质修饰酶)或脂质(如磷脂酰肌醇4,5-二磷酸[PtdIns(4,5)P2]、磷脂酸[PA]或心磷脂)。PA和心磷脂都具有锥形形状和负电荷(-2),这有利于募集裂变诱导蛋白的AHs。相反,PtdIns(4,5)P2的特征是具有高负电荷,能够募集裂变诱导蛋白AHs的碱性残基。在这里,我们提出裂变诱导蛋白的AHs包含与脂质辅因子结合的序列基序;因此,(K/R/H)(K/R/H)xx(K/R/H)是一个PtdIns(4,5)P2结合基序,(K/R)x(F/Y)是一个心磷脂结合基序,而KxK是一个PA结合基序。经过我们的分析,我们发现许多裂变诱导蛋白的AHs具有五个特性:(a)亲水性一侧至少有三个碱性残基,(b)能够寡聚,(c)插入膜的最佳(浅)深度,(d)在膜曲率产生方面具有正协同性,以及(e)与上述脂质之一有特异性相互作用。这些脂质辅因子有利于正确的构象、寡聚状态和最佳插入深度。在具有高负电荷(小于-1)的特定细胞器中最丰富的脂质通常是裂变事件中的脂质辅因子。有趣的是,已经报道了含AHs裂变诱导蛋白中的自然发生突变,这些突变与诸如中央核性肌病(发动蛋白2)、夏科-马里-图斯病(GDAP1)、帕金森病(α-突触核蛋白)等疾病有关。这些发现增加了对膜裂变过程的关注,对其完整理解将有助于阐明涉及蛋白AHs突变的疾病的发病机制。