College of Marine Life Sciences, Ocean University of China, Qingdao 266003, PR China.
Key Laboratory of Marine Chemistry Theory and Technology, Ocean University of China, Ministry of Education, Qingdao 266100, PR China.
Int J Syst Evol Microbiol. 2020 Mar;70(3):1623-1629. doi: 10.1099/ijsem.0.003948. Epub 2020 Jan 21.
Blue holes are unique geomorphological units characterized by steep redox and biogeochemical gradients. Yongle Blue Hole is located on the largest atoll (Yongle Atoll) of the western Xisha Islands in the South China Sea. A Gram-stain-negative, facultatively anaerobic, non-motile, non-flagellated marine bacterium with creamy white colonies, designated JC036, was isolated from Yongle Blue Hole. Cells were short-rod-shaped and catalase-negative. 16S rRNA gene sequence analysis showed that sequence similarities were lower than 91.6 % against all validly named species in the family ; a reconstructed phylogenetic tree indicated that strain JC036 formed a lineage with strains in the family . Growth occurred at 4-37 °C (optimum, 28 °C), at pH 5.0-9.0 (optimum, 7.0) and in the presence of 2-6 % (w/v) NaCl (optimum, 3 %). The prevalent isoprenoid quinone of strain JC036 was menaquinone-7 (MK-7). Iso-C and iso-C 3-OH were the predominant fatty acids. The major polar lipids included a phospholipid, phosphatidylethanolamine, an aminophospholipid and four unidentified lipids. The genomic DNA G+C content of strain JC036 was 37.8 mol%. Based on physiological and biochemical characteristics and whole genome comparisons, we propose a new genus and species, gen. nov., sp. nov., within the family . The type strain of is JC036 (=JCM 33128=MCCC 1K03579). From this study, a deeper understanding of the community of the microorganism and their roles in biogeochemical cycles, especially anaerobic bacteria, is provided.
蓝洞是具有陡峭氧化还原和生物地球化学梯度的独特地貌单元。永乐蓝洞位于南海西沙群岛西部最大的环礁(永乐环礁)上。从永乐蓝洞中分离得到一株革兰氏阴性、兼性厌氧、非运动、无鞭毛的海洋细菌,命名为 JC036。细胞呈短杆状,过氧化氢酶阴性。16S rRNA 基因序列分析表明,与该科所有有效命名的种的序列相似性均低于 91.6%;重建的系统发育树表明,菌株 JC036与该科的菌株形成一个分支。菌株 JC036 在 4-37°C(最适温度 28°C)、pH5.0-9.0(最适 pH7.0)和 2-6%(w/v)NaCl(最适 3%)的条件下生长。菌株 JC036 的主要类异戊二烯醌为甲萘醌-7(MK-7)。iso-C 和 iso-C 3-OH 是主要的脂肪酸。主要的极性脂包括磷脂、磷脂酰乙醇胺、氨基磷脂和四种未鉴定的脂类。菌株 JC036 的基因组 DNA G+C 含量为 37.8mol%。基于生理生化特征和全基因组比较,我们建议在该科内建立一个新属和新种, 属,nov.,种,nov.。该属的模式种为 , 种 JC036(=JCM 33128=MCCC 1K03579)。本研究加深了对微生物群落及其在生物地球化学循环中作用的认识,特别是对厌氧菌的认识。