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多歧藻叶绿体基因组的结构与组织。III. 从rbcL到trnI(CAU)的大单拷贝区域的基因组织

Structure and organization of Marchantia polymorpha chloroplast genome. III. Gene organization of the large single copy region from rbcL to trnI(CAU).

作者信息

Fukuzawa H, Kohchi T, Sano T, Shirai H, Umesono K, Inokuchi H, Ozeki H, Ohyama K

机构信息

Research Center for Cell and Tissue Culture, Faculty of Agriculture, Kyoto University, Japan.

出版信息

J Mol Biol. 1988 Sep 20;203(2):333-51. doi: 10.1016/0022-2836(88)90003-4.

DOI:10.1016/0022-2836(88)90003-4
PMID:3199436
Abstract

The nucleotide sequence (25,320 base-pairs) of a part of the large single-copy region of chloroplast DNA from the liverwort Marchantia polymorpha was determined. This region encodes putative genes for four tRNAs, isoleucine tRNA(CAU), arginine tRNA(CCG), proline tRNA(UGG) and tryptophan tRNA(CCA); eight photosynthetic polypeptides, the large subunit of ribulose bisphosphate carboxylase/oxygenase (rbcL), 51,000 Mr photosystem II chlorophyll alpha apoprotein (psbB), apocytochrome b-559 polypeptides (psbE and psbF), 10,000 Mr phosphoprotein (psbH), cytochrome f preprotein (petA), cytochrome b6 polypeptide (petB), and cytochrome b6/f complex subunit 4 polypeptide (petD); 13 ribosomal proteins (L2, L14, L16, L20, L22, L23, L33, S3, S8, S11, S12, S18 and S19); initiation factor 1 (infA); ribosome-associating polypeptide (secX); and alpha subunit of RNA polymerase (rpoA). Functionally related genes were located in several clusters in this region of the genome. There were two ribosomal protein gene clusters: rpl23-rpl2-rps19-rpl22-rps3-rpl16-+ ++rpl14-rps8-infA-secX-rps11-rpoA, with a gene arrangement similar to that of the Escherichia coli S10-spc-alpha operons, and the rps12'-rpl20-rps18-rpl33 cluster. There were gene clusters encoding photosynthesis components such as the psbB-psbH-petB-petD and the psbE-psbF clusters. Thirteen open reading frames, ranging in length from 31 to 434 amino acid residues, remain to be identified.

摘要

测定了苔类植物多歧银叶苔叶绿体DNA大单拷贝区一部分的核苷酸序列(25,320个碱基对)。该区域编码四个tRNA的推定基因,即异亮氨酸tRNA(CAU)、精氨酸tRNA(CCG)、脯氨酸tRNA(UGG)和色氨酸tRNA(CCA);八个光合多肽,即核酮糖二磷酸羧化酶/加氧酶的大亚基(rbcL)、51,000道尔顿的光系统II叶绿素α脱辅基蛋白(psbB)、脱辅基细胞色素b - 559多肽(psbE和psbF)、10,000道尔顿的磷蛋白(psbH)、细胞色素f前体蛋白(petA)、细胞色素b6多肽(petB)以及细胞色素b6/f复合体亚基4多肽(petD);13个核糖体蛋白(L2、L14、L16、L20、L22、L23、L33、S3、S8、S11、S12、S18和S19);起始因子1(infA);核糖体相关多肽(secX);以及RNA聚合酶的α亚基(rpoA)。功能相关的基因位于基因组的这一区域的几个簇中。有两个核糖体蛋白基因簇:rpl23 - rpl2 - rps19 - rpl22 - rps3 - rpl16 - +++rpl14 - rps8 - infA - secX - rps11 - rpoA,其基因排列与大肠杆菌S10 - spc - α操纵子相似,以及rps12' - rpl20 - rps18 - rpl33簇。有编码光合作用组件的基因簇,如psbB - psbH - petB - petD和psbE - psbF簇。13个开放阅读框,长度从31到434个氨基酸残基不等,有待鉴定。

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