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海洋甲藻中石房蛤毒素的生物合成:组学视角。

Biosynthesis of Saxitoxin in Marine Dinoflagellates: An Omics Perspective.

机构信息

School of Bioscience and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia.

Department of Earth Science and Environment, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia.

出版信息

Mar Drugs. 2020 Feb 5;18(2):103. doi: 10.3390/md18020103.

Abstract

Saxitoxin is an alkaloid neurotoxin originally isolated from the clam in 1957. This group of neurotoxins is produced by several species of freshwater cyanobacteria and marine dinoflagellates. The saxitoxin biosynthesis pathway was described for the first time in the 1980s and, since then, it was studied in more than seven cyanobacterial genera, comprising 26 genes that form a cluster ranging from 25.7 kb to 35 kb in sequence length. Due to the complexity of the genomic landscape, saxitoxin biosynthesis in dinoflagellates remains unknown. In order to reveal and understand the dynamics of the activity in such impressive unicellular organisms with a complex genome, a strategy that can carefully engage them in a systems view is necessary. Advances in omics technology (the collective tools of biological sciences) facilitated high-throughput studies of the genome, transcriptome, proteome, and metabolome of dinoflagellates. The omics approach was utilized to address saxitoxin-producing dinoflagellates in response to environmental stresses to improve understanding of dinoflagellates gene-environment interactions. Therefore, in this review, the progress in understanding dinoflagellate saxitoxin biosynthesis using an omics approach is emphasized. Further potential applications of metabolomics and genomics to unravel novel insights into saxitoxin biosynthesis in dinoflagellates are also reviewed.

摘要

石房蛤毒素是一种生物碱神经毒素,于 1957 年从贻贝中首次分离得到。该组神经毒素由几种淡水蓝藻和海洋甲藻产生。石房蛤毒素生物合成途径于 20 世纪 80 年代首次被描述,此后,在七个以上的蓝藻属中进行了研究,包括 26 个基因,这些基因形成一个簇,序列长度从 25.7kb 到 35kb 不等。由于基因组景观的复杂性,甲藻中的石房蛤毒素生物合成仍不清楚。为了揭示和理解具有复杂基因组的此类令人印象深刻的单细胞生物的活性动态,需要一种能够仔细地将它们纳入系统视角的策略。组学技术(生物科学的集体工具)的进步促进了甲藻的基因组、转录组、蛋白质组和代谢组的高通量研究。组学方法被用于研究产石房蛤毒素的甲藻对环境胁迫的反应,以提高对甲藻基因-环境相互作用的理解。因此,在这篇综述中,强调了使用组学方法理解甲藻石房蛤毒素生物合成的进展。还回顾了代谢组学和基因组学在揭示甲藻石房蛤毒素生物合成新见解方面的潜在应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8862/7073992/48248855b801/marinedrugs-18-00103-g001.jpg

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