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从一名健康日本男性粪便中分离出的嗜黏蛋白阿克曼氏菌JCM 30893的全基因组序列

Complete Genome Sequence of Akkermansia muciniphila JCM 30893, Isolated from Feces of a Healthy Japanese Male.

作者信息

Ogata Yusuke, Sakamoto Mitsuo, Ohkuma Moriya, Hattori Masahira, Suda Wataru

机构信息

Laboratory for Microbiome Sciences, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.

Microbe Division/Japan Collection of Microorganisms, RIKEN BioResource Research Center, Tsukuba, Ibaraki, Japan

出版信息

Microbiol Resour Announc. 2020 Feb 13;9(7):e01543-19. doi: 10.1128/MRA.01543-19.

DOI:10.1128/MRA.01543-19
PMID:32054713
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7019068/
Abstract

is an anaerobic and mucin-degrading bacterium in the human gut. Here, we report the complete genome sequence of JCM 30893 harboring the plasmid pJ30893.

摘要

是人类肠道中的一种厌氧且能降解黏蛋白的细菌。在此,我们报告了携带质粒pJ30893的JCM 30893的完整基因组序列。

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Microbiol Resour Announc. 2019 Jan 17;8(3). doi: 10.1128/MRA.01487-18. eCollection 2019 Jan.
2
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Bioinformatics. 2018 Sep 15;34(18):3094-3100. doi: 10.1093/bioinformatics/bty191.
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A large-scale evaluation of algorithms to calculate average nucleotide identity.计算平均核苷酸一致性的算法的大规模评估。
Antonie Van Leeuwenhoek. 2017 Oct;110(10):1281-1286. doi: 10.1007/s10482-017-0844-4. Epub 2017 Feb 15.
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Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotation.原核病毒直系同源组(pVOGs):用于比较基因组学和蛋白质家族注释的资源。
Nucleic Acids Res. 2017 Jan 4;45(D1):D491-D498. doi: 10.1093/nar/gkw975. Epub 2016 Oct 26.
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Crosstalk between Gut Microbiota and Dietary Lipids Aggravates WAT Inflammation through TLR Signaling.肠道微生物群与膳食脂质之间的串扰通过TLR信号传导加剧白色脂肪组织炎症。
Cell Metab. 2015 Oct 6;22(4):658-68. doi: 10.1016/j.cmet.2015.07.026. Epub 2015 Aug 27.
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Gut. 2016 Mar;65(3):426-36. doi: 10.1136/gutjnl-2014-308778. Epub 2015 Jun 22.
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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM:评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
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Expanded microbial genome coverage and improved protein family annotation in the COG database.COG数据库中微生物基因组覆盖范围的扩大及蛋白质家族注释的改进。
Nucleic Acids Res. 2015 Jan;43(Database issue):D261-9. doi: 10.1093/nar/gku1223. Epub 2014 Nov 26.
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Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity.阿克曼氏菌与肠道上皮细胞的串扰控制饮食诱导的肥胖。
Proc Natl Acad Sci U S A. 2013 May 28;110(22):9066-71. doi: 10.1073/pnas.1219451110. Epub 2013 May 13.
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