网纹蟒肠道粘蛋白降解专家嗜糖阿克曼氏菌菌株PytT的全基因组序列
Complete Genome Sequence of Akkermansia glycaniphila Strain PytT, a Mucin-Degrading Specialist of the Reticulated Python Gut.
作者信息
Ouwerkerk Janneke P, Koehorst Jasper J, Schaap Peter J, Ritari Jarmo, Paulin Lars, Belzer Clara, de Vos Willem M
机构信息
Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands.
Systems and Synthetic Biology, Wageningen University, Wageningen, The Netherlands.
出版信息
Genome Announc. 2017 Jan 5;5(1):e01098-16. doi: 10.1128/genomeA.01098-16.
Abstract
Akkermansia glycaniphila is a novel Akkermansia species that was isolated from the intestine of the reticulated python and shares the capacity to degrade mucin with the human strain Akkermansia muciniphila Muc Here, we report the complete genome sequence of strain Pyt of 3,074,121 bp. The genomic analysis reveals genes for mucin degradation and aerobic respiration.
摘要
嗜糖阿克曼氏菌是从网纹蟒肠道中分离出的一种新型阿克曼氏菌，与人类菌株嗜黏蛋白阿克曼氏菌Muc具有相同的降解黏蛋白的能力。在此，我们报告了菌株Pyt的完整基因组序列，其长度为3,074,121 bp。基因组分析揭示了与黏蛋白降解和有氧呼吸相关的基因。
相似文献
1
Complete Genome Sequence of Akkermansia glycaniphila Strain PytT, a Mucin-Degrading Specialist of the Reticulated Python Gut.
Genome Announc. 2017 Jan 5;5(1):e01098-16. doi: 10.1128/genomeA.01098-16.
2
Akkermansia glycaniphila sp. nov., an anaerobic mucin-degrading bacterium isolated from reticulated python faeces.
Int J Syst Evol Microbiol. 2016 Nov;66(11):4614-4620. doi: 10.1099/ijsem.0.001399. Epub 2016 Aug 5.
3
Comparative Genomics and Physiology of Isolates from Human Intestine Reveal Specialized Mucosal Adaptation.
Microorganisms. 2022 Aug 9;10(8):1605. doi: 10.3390/microorganisms10081605.
4
A thousand metagenome-assembled genomes of reveal phylogroups and geographical and functional variations in the human gut.
Front Cell Infect Microbiol. 2022 Aug 2;12:957439. doi: 10.3389/fcimb.2022.957439. eCollection 2022.
5
Comparative genomic and functional analysis of Akkermansia muciniphila and closely related species.
Genes Genomics. 2019 Nov;41(11):1253-1264. doi: 10.1007/s13258-019-00855-1. Epub 2019 Aug 9.
6
Genome-Scale Model and Omics Analysis of Metabolic Capacities of Reveal a Preferential Mucin-Degrading Lifestyle.
Appl Environ Microbiol. 2017 Aug 31;83(18). doi: 10.1128/AEM.01014-17. Print 2017 Sep 15.
7
Characterizing the mucin-degrading capacity of the human gut microbiota.
Sci Rep. 2022 May 19;12(1):8456. doi: 10.1038/s41598-022-11819-z.
8
Complete Genome Sequence of Akkermansia muciniphila JCM 30893, Isolated from Feces of a Healthy Japanese Male.
Microbiol Resour Announc. 2020 Feb 13;9(7):e01543-19. doi: 10.1128/MRA.01543-19.
9
in the Human Gastrointestinal Tract: When, Where, and How?
Microorganisms. 2018 Jul 23;6(3):75. doi: 10.3390/microorganisms6030075.
10
A Purified Aspartic Protease from Plays an Important Role in Degrading Muc2.
Int J Mol Sci. 2019 Dec 20;21(1):72. doi: 10.3390/ijms21010072.
引用本文的文献
1
Characterisation of the Gastrointestinal Microbiome of Green Sea Turtles (): A Systematic Review.
Animals (Basel). 2025 May 29;15(11):1594. doi: 10.3390/ani15111594.
2
: A promising probiotic against inflammation and metabolic disorders.
Virulence. 2024 Dec;15(1):2375555. doi: 10.1080/21505594.2024.2375555. Epub 2024 Aug 27.
3
Variability of Inverted Repeats in All Available Genomes of Bacteria.
Microbiol Spectr. 2023 Aug 17;11(4):e0164823. doi: 10.1128/spectrum.01648-23. Epub 2023 Jun 26.
4
Health and Disease: , the Shining Star of the Gut Flora.
Research (Wash D C). 2023;6:0107. doi: 10.34133/research.0107. Epub 2023 Apr 3.
5
Comparative Genomics and Physiology of Isolates from Human Intestine Reveal Specialized Mucosal Adaptation.
Microorganisms. 2022 Aug 9;10(8):1605. doi: 10.3390/microorganisms10081605.
6
A thousand metagenome-assembled genomes of reveal phylogroups and geographical and functional variations in the human gut.
Front Cell Infect Microbiol. 2022 Aug 2;12:957439. doi: 10.3389/fcimb.2022.957439. eCollection 2022.
7
Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly.
Genome Biol. 2021 Jul 14;22(1):209. doi: 10.1186/s13059-021-02427-7.
8
Metagenomic insights into the diversity of carbohydrate-degrading enzymes in the yak fecal microbial community.
BMC Microbiol. 2020 Oct 10;20(1):302. doi: 10.1186/s12866-020-01993-3.
9
Comparative genomic and functional analysis of Akkermansia muciniphila and closely related species.
Genes Genomics. 2019 Nov;41(11):1253-1264. doi: 10.1007/s13258-019-00855-1. Epub 2019 Aug 9.
10
Rabbit Microbiota Changes Throughout the Intestinal Tract.
Front Microbiol. 2018 Sep 13;9:2144. doi: 10.3389/fmicb.2018.02144. eCollection 2018.
本文引用的文献
1
Adaptation of Akkermansia muciniphila to the Oxic-Anoxic Interface of the Mucus Layer.
Appl Environ Microbiol. 2016 Dec 1;82(23):6983-6993. doi: 10.1128/AEM.01641-16. Epub 2016 Sep 23.
2
Akkermansia glycaniphila sp. nov., an anaerobic mucin-degrading bacterium isolated from reticulated python faeces.
Int J Syst Evol Microbiol. 2016 Nov;66(11):4614-4620. doi: 10.1099/ijsem.0.001399. Epub 2016 Aug 5.
3
Activities at the Universal Protein Resource (UniProt).
Nucleic Acids Res. 2014 Jan;42(Database issue):D191-8. doi: 10.1093/nar/gkt1140. Epub 2013 Nov 18.
4
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.
Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.
5
Rfam 11.0: 10 years of RNA families.
Nucleic Acids Res. 2013 Jan;41(Database issue):D226-32. doi: 10.1093/nar/gks1005. Epub 2012 Nov 3.
6
Microbes inside--from diversity to function: the case of Akkermansia.
ISME J. 2012 Aug;6(8):1449-58. doi: 10.1038/ismej.2012.6. Epub 2012 Mar 22.
7
InterPro in 2011: new developments in the family and domain prediction database.
Nucleic Acids Res. 2012 Jan;40(Database issue):D306-12. doi: 10.1093/nar/gkr948. Epub 2011 Nov 16.
8
Postprandial remodeling of the gut microbiota in Burmese pythons.
ISME J. 2010 Nov;4(11):1375-85. doi: 10.1038/ismej.2010.71. Epub 2010 Jun 3.
9
Prodigal: prokaryotic gene recognition and translation initiation site identification.
BMC Bioinformatics. 2010 Mar 8;11:119. doi: 10.1186/1471-2105-11-119.
10
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
Zotero 插件