Department of Botany, Faculty of Science, Charles University, Prague, Czech Republic.
Laboratory of Fungal Genetics and Metabolism, Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, CZ-14220, Prague, Czech Republic.
Mycologia. 2020 Mar-Apr;112(2):342-370. doi: 10.1080/00275514.2019.1698923. Epub 2020 Feb 19.
section encompasses almost 80 homothallic and anamorphic species, mostly isolated from soil, plant material, or the indoor environment. Some species are clinically relevant or produce mycotoxins. This study reevaluated the species boundaries within several clades of section . Five data sets were assembled, each containing presumptive new species and their closest relatives, and phylogenetic and phenotypic analyses were performed. We tested the hypotheses that the newly isolated or reexamined strains constitute separate species (splitting approach) or should be treated as part of broadly defined species (lumping approach). Four DNA sequence loci were amplified, internal transcribed spacer (ITS) and large subunit (LSU) regions of the rDNA and partial sequences of the β-tubulin (), calmodulin (), and RNA polymerase II second largest subunit () genes. The latter three loci were used for the phylogenetic analysis and served as input for single-locus (GMYC, bGMYC, PTP, and bPTP) and multilocus (STACEY and BP&P) species delimitation analyses. The phenotypic analysis comprised macro- and micromorphology (including scanning electron microscopy) and comparison of cardinal growth temperatures. The phylogenetic analysis supported the splitting hypothesis in all cases, and based on the combined approach, we propose six new species, four that are homothallic and two anamorphic. Four new species were isolated from the indoor environment (Jamaica, Trinidad and Tobago, USA), one originated from soil (Australia), and one from a kangaroo rat cheek pouch (USA).
节 几乎包含了 80 个同宗和无性的种,主要分离自土壤、植物材料或室内环境。一些种具有临床相关性或产生真菌毒素。本研究重新评估了节内几个类群的种的界限。组装了五个数据集,每个数据集都包含假定的新种及其最接近的亲缘种,并进行了系统发育和表型分析。我们检验了以下两个假说:新分离或重新检查的菌株是否构成单独的种(分裂方法),或者是否应被视为广义定义的种的一部分(合并方法)。扩增了四个 DNA 序列基因座,rDNA 的内部转录间隔区(ITS)和大亚基(LSU)区域以及β-微管蛋白()、钙调蛋白()和 RNA 聚合酶 II 第二大亚基()基因的部分序列。后三个基因座用于系统发育分析,并作为单基因座(GMYC、bGMYC、PTP 和 bPTP)和多基因座(STACEY 和 BP&P)种的划分分析的输入。表型分析包括宏观和微观形态(包括扫描电子显微镜)以及比较主要生长温度。系统发育分析在所有情况下都支持分裂假说,并且基于组合方法,我们提出了六个新种,其中四个是同宗的,两个是无性的。四个新种是从室内环境(牙买加、特立尼达和多巴哥、美国)中分离出来的,一个来自土壤(澳大利亚),一个来自袋鼠鼠颊囊(美国)。