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Evolution of Human Respiratory Syncytial Virus (RSV) over Multiple Seasons in New South Wales, Australia.澳大利亚新南威尔士州多个季节中人类呼吸道合胞病毒(RSV)的演变。
Viruses. 2018 Sep 6;10(9):476. doi: 10.3390/v10090476.
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An optimized methodology for whole genome sequencing of RNA respiratory viruses from nasopharyngeal aspirates.鼻咽抽吸物中 RNA 呼吸道病毒全基因组测序的优化方法。
PLoS One. 2018 Jun 25;13(6):e0199714. doi: 10.1371/journal.pone.0199714. eCollection 2018.
3
Detection of Influenza C Viruses Among Outpatients and Patients Hospitalized for Severe Acute Respiratory Infection, Minnesota, 2013-2016.2013-2016 年美国明尼苏达州门罗县门诊和住院严重急性呼吸道感染患者中 C 型流感病毒的检测
Clin Infect Dis. 2018 Mar 19;66(7):1092-1098. doi: 10.1093/cid/cix931.
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Respiratory Syncytial Virus whole-genome sequencing identifies convergent evolution of sequence duplication in the C-terminus of the G gene.呼吸道合胞病毒全基因组测序确定了G基因C末端序列重复的趋同进化。
Sci Rep. 2016 May 23;6:26311. doi: 10.1038/srep26311.
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MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.MEGA7:适用于更大数据集的分子进化遗传学分析版本7.0
Mol Biol Evol. 2016 Jul;33(7):1870-4. doi: 10.1093/molbev/msw054. Epub 2016 Mar 22.
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Viral Bronchiolitis in Children.儿童病毒性细支气管炎
N Engl J Med. 2016 Jan 7;374(1):62-72. doi: 10.1056/NEJMra1413456.
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Partial Attenuation of Respiratory Syncytial Virus with a Deletion of a Small Hydrophobic Gene Is Associated with Elevated Interleukin-1β Responses.缺失小疏水基因的呼吸道合胞病毒部分减毒与白细胞介素-1β反应升高有关。
J Virol. 2015 Sep;89(17):8974-81. doi: 10.1128/JVI.01070-15. Epub 2015 Jun 17.
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Sequencing and analysis of globally obtained human respiratory syncytial virus A and B genomes.全球范围内获取的人呼吸道合胞病毒A和B基因组的测序与分析。
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A metagenomics and case-control study to identify viruses associated with bovine respiratory disease.一项用于鉴定与牛呼吸道疾病相关病毒的宏基因组学和病例对照研究。
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Respiratory syncytial virus: virology, reverse genetics, and pathogenesis of disease.呼吸道合胞病毒:病毒学、反向遗传学和疾病发病机制。
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2017 年明尼苏达州夏季严重呼吸道合胞病毒 B 型疾病暴发与遗传上不同的病毒谱系出现有关。

Summer Outbreak of Severe RSV-B Disease, Minnesota, 2017 Associated with Emergence of a Genetically Distinct Viral Lineage.

机构信息

Department of Medicine, Division of Infectious Diseases and International Medicine, University of Minnesota, Minneapolis, Minnesota, USA.

Department of Pediatrics, Division of Pediatric Infectious Diseases and Immunology, University of Minnesota, Minneapolis, Minnesota, USA.

出版信息

J Infect Dis. 2020 Jun 29;222(2):288-297. doi: 10.1093/infdis/jiaa075.

DOI:10.1093/infdis/jiaa075
PMID:32083677
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7323494/
Abstract

BACKGROUND

Respiratory syncytial virus (RSV) typically causes winter outbreaks in temperate climates. During summer 2017, the Minnesota Department of Health received a report of increased cases of severe RSV-B infection.

METHODS

We compared characteristics of summer 2017 cases with those of 2014-2018 summers. To understand the genetic relatedness among viruses, we performed high-throughput sequencing of RSV from patients with a spectrum of illness from sites in Minnesota and Wisconsin.

RESULTS

From May to September 2017, 58 RSV cases (43 RSV-B) were reported compared to 20-29 cases (3-7 RSV-B) during these months in other years. Median age and frequency of comorbidities were similar, but 55% (24/43) were admitted to the ICU in 2017 compared to 12% in preceding 3 years (odds ratio, 4.84, P < .01). Sequencing was performed on 137 specimens from March 2016 to March 2018. Outbreak cases formed a unique clade sharing a single conserved nonsynonymous change in the SH gene. We observed increased cases during the following winter season, when the new lineage was the predominant strain.

CONCLUSIONS

We identified an outbreak of severe RSV-B disease associated with a new genetic lineage among urban Minnesota children during a time of expected low RSV circulation.

摘要

背景

呼吸道合胞病毒(RSV)通常在温带气候中引发冬季疫情。2017 年夏季,明尼苏达州卫生部收到了一份关于严重 RSV-B 感染病例增加的报告。

方法

我们比较了 2017 年夏季病例与 2014-2018 年夏季病例的特征。为了了解病毒之间的遗传关系,我们对来自明尼苏达州和威斯康星州不同地点的不同疾病严重程度的患者的 RSV 进行了高通量测序。

结果

2017 年 5 月至 9 月期间报告了 58 例 RSV 病例(43 例 RSV-B),而在其他年份的同期报告了 20-29 例(3-7 例 RSV-B)。中位年龄和合并症的频率相似,但 2017 年 55%(24/43)的患者被收入 ICU,而前 3 年为 12%(比值比,4.84,P<.01)。对 2016 年 3 月至 2018 年 3 月的 137 个样本进行了测序。暴发病例形成了一个独特的分支,在 SH 基因中共享一个单一的保守非同义突变。我们观察到在接下来的冬季季节,即新谱系成为主要流行株时,病例数量增加。

结论

我们在明尼苏达州城市儿童中发现了一种与新遗传谱系相关的严重 RSV-B 疾病暴发,而此时 RSV 的流行率预计较低。