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胰腺癌中预后性剪接因子的鉴定及其潜在调控机制的探索。

Identification of prognostic splicing factors and exploration of their potential regulatory mechanisms in pancreatic adenocarcinoma.

作者信息

Rong Min-Hua, Zhu Zhan-Hui, Guan Ying, Li Mei-Wei, Zheng Jia-Shuo, Huang Yue-Qi, Wei Dan-Ming, Li Ying-Mei, Wu Xiao-Ju, Bu Hui-Ping, Peng Hui-Liu, Wei Xiao-Lin, Li Guo-Sheng, Li Ming-Xuan, Chen Ming-Hui, Huang Su-Ning

机构信息

Affiliated Cancer Hospital, Guangxi Medical University, Research Department, Nanning, Guangxi Zhuang Autonomous Region, P.R. China.

Affiliated Cancer Hospital, Guangxi Medical University, Department of Radiotherapy, Nanning, Guangxi Zhuang Autonomous Region, P.R. China.

出版信息

PeerJ. 2020 Feb 11;8:e8380. doi: 10.7717/peerj.8380. eCollection 2020.

Abstract

Pancreatic adenocarcinoma (PAAD), the most common subtype of pancreatic cancer, is a highly lethal disease. In this study, we integrated the expression profiles of splicing factors (SFs) of PAAD from RNA-sequencing data to provide a comprehensive view of the clinical significance of SFs. A prognostic index (PI) based on SFs was developed using the least absolute shrinkage and selection operator (LASSO) COX analysis. The PI exhibited excellent performance in predicting the status of overall survival of PAAD patients. We also used the percent spliced in (PSI) value obtained from SpliceSeq software to quantify different types of alternative splicing (AS). The prognostic value of AS events was explored using univariate COX and LASSO COX analyses; AS-based PIs were also proposed. The integration of prognosis-associated SFs and AS events suggested the potential regulatory mechanisms of splicing processes in PAAD. This study defined the markedly clinical significance of SFs and provided novel insight into their potential regulatory mechanisms.

摘要

胰腺腺癌(PAAD)是胰腺癌最常见的亚型,是一种高致死性疾病。在本研究中,我们整合了来自RNA测序数据的PAAD剪接因子(SFs)表达谱,以全面了解SFs的临床意义。使用最小绝对收缩和选择算子(LASSO)COX分析开发了基于SFs的预后指数(PI)。该PI在预测PAAD患者的总生存状态方面表现出色。我们还使用从SpliceSeq软件获得的剪接百分率(PSI)值来量化不同类型的可变剪接(AS)。使用单变量COX和LASSO COX分析探索AS事件的预后价值;还提出了基于AS的PI。预后相关SFs和AS事件的整合提示了PAAD中剪接过程的潜在调控机制。本研究明确了SFs显著的临床意义,并为其潜在调控机制提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f57/7020824/05c039c920eb/peerj-08-8380-g001.jpg

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