• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

翁氏拟硫弯菌属,新属,一种化学自养硫酸盐还原菌,分离自印度洋翁氏热液区,以及将塞内加尔脱硫弧菌重新分类为翁氏拟硫弯菌复合种。

Paradesulfovibrio onnuriensis gen. nov., sp. nov., a chemolithoautotrophic sulfate-reducing bacterium isolated from the Onnuri vent field of the Indian Ocean and reclassification of Desulfovibrio senegalensis as Paradesulfovibrio senegalensis comb. nov.

机构信息

Korea Institute of Ocean Science and Technology, Busan, 49111, Republic of Korea.

KIOST School, University of Science and Technology, Daejeon, 34113, Republic of Korea.

出版信息

J Microbiol. 2020 Apr;58(4):252-259. doi: 10.1007/s12275-020-9376-0. Epub 2020 Feb 27.

DOI:10.1007/s12275-020-9376-0
PMID:32103446
Abstract

An anaerobic, rod-shaped, mesophilic, chemolithoautotrophic, sulfate-reducing bacterial strain IOR2 was isolated from a newly found deep-sea hydrothermal vent (OVF, Onnuri Vent Field) area in the central Indian Ocean ridge (11°24'88″ S 66°25'42″ E, 2021 m water depth). The 16S rRNA gene sequence analysis revealed that the strain IOR2 was most closely related to Desulfovibrio senegalensis BLaC1 (96.7%). However, it showed low similarity with the members of the family Desulfovibrionaceae, such as Desulfovibrio tunisiensis RB22 (94.0%), D. brasiliensis LVform1 (93.9%), D. halophilus DSM 5663 (93.7%), and Pseudodesulfovibrio aespoeensis Aspo-2 (93.2%). The strain IOR2 could grow at 23-42°C (optimum 37°C), pH 5.0-8.0 (optimum pH 7.0) and with 0.5-6.5% (optimum 3.0%) NaCl. The strain could use lactate, pyruvate, H, and glycerol as electron donors and sulfate, thiosulfate, and sulfite as electron acceptors. The major fatty acids of the strain IOR2 were iso-C, iso-C, ante-iso-C, and summed feature 9 (C methyl/iso-Cω9c). Both the strains IOR2 and BLaC1 could grow with CO and H as the sole sources of carbon and energy, respectively. Genomic evidence for the Wood-Ljungdahl pathway in both the strains reflects chemolithoautotrophic growth. The DNA G + C content of the strain IOR2 and BLaC1 was 58.1-60.5 mol%. Based on the results of the phylogenetic and physiologic studies, Paradesulfovibrio onnuriensis gen. nov., sp. nov. with the type strain IOR2 (= KCTC 15845 = MCCC 1K04559) was proposed to be a member of the family Desulfovibrionaceae. We have also proposed the reclassification of D. senegalensis as Paradesulfovibrio senegalensis comb. nov.

摘要

一株新发现的深海热液喷口(OVF,Onnuri 喷口场)中分离到的厌氧、杆状、嗜中温、化能自养、硫酸盐还原细菌 IOR2 菌株,位于印度洋中脊(11°24'88″ S 66°25'42″ E,水深 2021 米)。16S rRNA 基因序列分析表明,菌株 IOR2 与 Senegalensis BLaC1(96.7%)最为密切相关。然而,它与 Desulfovibrionaceae 家族的成员如 Tunisiensis RB22(94.0%)、Brasiliensis LVform1(93.9%)、Halophilus DSM 5663(93.7%)和 Pseudodesulfovibrio aespoeensis Aspo-2(93.2%)的相似度较低。菌株 IOR2 可在 23-42°C(最佳 37°C)、pH5.0-8.0(最佳 pH7.0)和 0.5-6.5%(最佳 3.0%)NaCl 下生长。该菌株可利用乳酸盐、丙酮酸盐、H 和甘油作为电子供体,硫酸盐、硫代硫酸盐和亚硫酸盐作为电子受体。菌株 IOR2 的主要脂肪酸为 iso-C、iso-C、ante-iso-C 和总和特征 9(C 甲基/iso-Cω9c)。IOR2 株和 BLaC1 株均可分别以 CO 和 H 作为唯一的碳源和能源进行生长。两株菌的基因组证据均表明 Wood-Ljungdahl 途径为化能自养生长。菌株 IOR2 和 BLaC1 的 DNA G + C 含量为 58.1-60.5mol%。基于系统发育和生理研究结果,提出了一个新的属 Paradesulfovibrio onnuriensis gen. nov.,sp. nov.,其模式菌株为 IOR2(=KCTC 15845=MCCC 1K04559),属于 Desulfovibrionaceae 家族。我们还建议将 Senegalensis 重新分类为 Paradesulfovibrio senegalensis comb. nov.

相似文献

1
Paradesulfovibrio onnuriensis gen. nov., sp. nov., a chemolithoautotrophic sulfate-reducing bacterium isolated from the Onnuri vent field of the Indian Ocean and reclassification of Desulfovibrio senegalensis as Paradesulfovibrio senegalensis comb. nov.翁氏拟硫弯菌属,新属,一种化学自养硫酸盐还原菌,分离自印度洋翁氏热液区,以及将塞内加尔脱硫弧菌重新分类为翁氏拟硫弯菌复合种。
J Microbiol. 2020 Apr;58(4):252-259. doi: 10.1007/s12275-020-9376-0. Epub 2020 Feb 27.
2
Pseudodesulfovibrio indicus gen. nov., sp. nov., a piezophilic sulfate-reducing bacterium from the Indian Ocean and reclassification of four species of the genus Desulfovibrio.印度假脱硫弧菌,新属,新种,一种来自印度洋的嗜压硫酸盐还原菌及脱硫弧菌属四个种的重新分类。
Int J Syst Evol Microbiol. 2016 Oct;66(10):3904-3911. doi: 10.1099/ijsem.0.001286. Epub 2016 Jul 8.
3
Desulfovibrio senegalensis sp. nov., a mesophilic sulfate reducer isolated from marine sediment.塞内加尔脱硫弧菌新种,一种从海洋沉积物中分离出的嗜温硫酸盐还原菌。
Int J Syst Evol Microbiol. 2017 Sep;67(9):3162-3166. doi: 10.1099/ijsem.0.001997. Epub 2017 Sep 4.
4
Desulfovibrio portus sp. nov., a novel sulfate-reducing bacterium in the class Deltaproteobacteria isolated from an estuarine sediment.波图斯脱硫弧菌新种,一种从河口沉积物中分离出的属于δ-变形菌纲的新型硫酸盐还原菌。
J Gen Appl Microbiol. 2009 Apr;55(2):125-33. doi: 10.2323/jgam.55.125.
5
Desulfovibrio tunisiensis sp. nov., a novel weakly halotolerant, sulfate-reducing bacterium isolated from exhaust water of a Tunisian oil refinery.突尼斯脱硫弧菌新种,一种从突尼斯炼油厂废水分离出的新型弱耐盐硫酸盐还原菌。
Int J Syst Evol Microbiol. 2009 May;59(Pt 5):1059-63. doi: 10.1099/ijs.0.000943-0.
6
Desulfovibrio oceani subsp. oceani sp. nov., subsp. nov. and Desulfovibrio oceani subsp. galateae subsp. nov., novel sulfate-reducing bacteria isolated from the oxygen minimum zone off the coast of Peru.海洋脱硫弧菌海洋亚种,新亚种和海洋脱硫弧菌加利亚亚种,新亚种,从秘鲁沿海缺氧区分离到的新型硫酸盐还原菌。
Antonie Van Leeuwenhoek. 2010 Mar;97(3):221-9. doi: 10.1007/s10482-009-9403-y. Epub 2009 Dec 11.
7
Desulfovibrio marinisediminis sp. nov., a novel sulfate-reducing bacterium isolated from coastal marine sediment via enrichment with Casamino acids.海相沉积物脱硫弧菌新种,一种通过用酪蛋白氨基酸富集从沿海海洋沉积物中分离出的新型硫酸盐还原菌。
Int J Syst Evol Microbiol. 2008 Oct;58(Pt 10):2433-8. doi: 10.1099/ijs.0.65750-0.
8
Desulfobaculum xiamenensis gen. nov., sp. nov., a member of the family Desulfovibrionaceae isolated from marine mangrove sediment.厦门脱硫弧菌属,新属,脱硫弧菌科的一个成员,从海洋红树林沉积物中分离得到。
Int J Syst Evol Microbiol. 2012 Jul;62(Pt 7):1570-1575. doi: 10.1099/ijs.0.036632-0. Epub 2011 Aug 26.
9
Thermodesulfatator atlanticus sp. nov., a thermophilic, chemolithoautotrophic, sulfate-reducing bacterium isolated from a Mid-Atlantic Ridge hydrothermal vent.热脱硫盐还原菌属 atlanticus 种,一种来自大西洋中脊热液喷口的嗜热、化能自养、硫酸盐还原细菌。
Int J Syst Evol Microbiol. 2010 Jan;60(Pt 1):33-38. doi: 10.1099/ijs.0.009449-0. Epub 2009 Jul 31.
10
Thermodesulfatator indicus gen. nov., sp. nov., a novel thermophilic chemolithoautotrophic sulfate-reducing bacterium isolated from the Central Indian Ridge.嗜热脱硫菌属新属新种——印度嗜热脱硫菌,一种从印度洋中脊分离出的新型嗜热化能自养硫酸盐还原菌。
Int J Syst Evol Microbiol. 2004 Jan;54(Pt 1):227-233. doi: 10.1099/ijs.0.02669-0.

引用本文的文献

1
Sulfate-Reducing Bacteria Isolated from an Oil Field in Kazakhstan and a Description of sp. nov.从哈萨克斯坦某油田分离出的硫酸盐还原菌及新种描述
Microorganisms. 2024 Dec 11;12(12):2552. doi: 10.3390/microorganisms12122552.
2
Establishment of Genome Based Criteria for Classification of the Family Desulfovibrionaceae and Proposal of Two Novel Genera, gen. nov. and gen. nov.基于基因组的脱硫弧菌科分类标准的建立及两个新属的提议,新属1和新属2
Front Microbiol. 2022 May 25;13:738205. doi: 10.3389/fmicb.2022.738205. eCollection 2022.
3
Pseudodesulfovibrio sediminis sp. nov., a mesophilic and neutrophilic sulfate-reducing bacterium isolated from sediment of a brackish lake.

本文引用的文献

1
Pseudodesulfovibrio hydrargyri sp. nov., a mercury-methylating bacterium isolated from a brackish sediment.嗜汞假脱硫弧菌新种,一种从微咸沉积物中分离出的汞甲基化细菌。
Int J Syst Evol Microbiol. 2018 May;68(5):1461-1466. doi: 10.1099/ijsem.0.002173. Epub 2018 Mar 13.
2
UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction.UBCG:用于系统发育树重建的最新细菌核心基因集和管道。
J Microbiol. 2018 Apr;56(4):280-285. doi: 10.1007/s12275-018-8014-6. Epub 2018 Feb 28.
3
Complete Genome Sequence of Strain G11, a Model Sulfate-Reducing, Hydrogenotrophic, and Syntrophic Partner Organism.
假脱硫孤菌属 sediminis 种,一种中温、嗜中性硫酸盐还原细菌,从咸水湖沉积物中分离得到。
Arch Microbiol. 2022 May 9;204(6):307. doi: 10.1007/s00203-022-02870-5.
4
A sulfate-reducing bacterial genus, Desulfosediminicola gen. nov., comprising two novel species cultivated from tidal-flat sediments.硫酸盐还原菌属 Desulfosediminicola 属,由从潮滩沉积物中培养的两种新型种组成。
Sci Rep. 2021 Oct 7;11(1):19978. doi: 10.1038/s41598-021-99469-5.
菌株G11的全基因组序列,一种硫酸盐还原、氢营养和互营伙伴模式生物。
Genome Announc. 2017 Oct 26;5(43):e01207-17. doi: 10.1128/genomeA.01207-17.
4
Desulfovibrio senegalensis sp. nov., a mesophilic sulfate reducer isolated from marine sediment.塞内加尔脱硫弧菌新种,一种从海洋沉积物中分离出的嗜温硫酸盐还原菌。
Int J Syst Evol Microbiol. 2017 Sep;67(9):3162-3166. doi: 10.1099/ijsem.0.001997. Epub 2017 Sep 4.
5
A large-scale evaluation of algorithms to calculate average nucleotide identity.计算平均核苷酸一致性的算法的大规模评估。
Antonie Van Leeuwenhoek. 2017 Oct;110(10):1281-1286. doi: 10.1007/s10482-017-0844-4. Epub 2017 Feb 15.
6
Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies.推出 EzBioCloud:一个统一分类学的 16S rRNA 基因序列和全基因组组装数据库。
Int J Syst Evol Microbiol. 2017 May;67(5):1613-1617. doi: 10.1099/ijsem.0.001755. Epub 2017 May 30.
7
Halodesulfovibrio spirochaetisodalis gen. nov. sp. nov. and reclassification of four Desulfovibrio spp.螺旋体状卤脱硫弧菌新属新种及四个脱硫弧菌属物种的重新分类
Int J Syst Evol Microbiol. 2017 Jan;67(1):87-93. doi: 10.1099/ijsem.0.001574. Epub 2017 Feb 20.
8
Pseudodesulfovibrio indicus gen. nov., sp. nov., a piezophilic sulfate-reducing bacterium from the Indian Ocean and reclassification of four species of the genus Desulfovibrio.印度假脱硫弧菌,新属,新种,一种来自印度洋的嗜压硫酸盐还原菌及脱硫弧菌属四个种的重新分类。
Int J Syst Evol Microbiol. 2016 Oct;66(10):3904-3911. doi: 10.1099/ijsem.0.001286. Epub 2016 Jul 8.
9
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
10
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences.利用 16S rRNA 基因序列统一培养和未培养的细菌和古菌分类。
Nat Rev Microbiol. 2014 Sep;12(9):635-45. doi: 10.1038/nrmicro3330.