Korea Institute of Ocean Science and Technology, Busan, 49111, Republic of Korea.
KIOST School, University of Science and Technology, Daejeon, 34113, Republic of Korea.
J Microbiol. 2020 Apr;58(4):252-259. doi: 10.1007/s12275-020-9376-0. Epub 2020 Feb 27.
An anaerobic, rod-shaped, mesophilic, chemolithoautotrophic, sulfate-reducing bacterial strain IOR2 was isolated from a newly found deep-sea hydrothermal vent (OVF, Onnuri Vent Field) area in the central Indian Ocean ridge (11°24'88″ S 66°25'42″ E, 2021 m water depth). The 16S rRNA gene sequence analysis revealed that the strain IOR2 was most closely related to Desulfovibrio senegalensis BLaC1 (96.7%). However, it showed low similarity with the members of the family Desulfovibrionaceae, such as Desulfovibrio tunisiensis RB22 (94.0%), D. brasiliensis LVform1 (93.9%), D. halophilus DSM 5663 (93.7%), and Pseudodesulfovibrio aespoeensis Aspo-2 (93.2%). The strain IOR2 could grow at 23-42°C (optimum 37°C), pH 5.0-8.0 (optimum pH 7.0) and with 0.5-6.5% (optimum 3.0%) NaCl. The strain could use lactate, pyruvate, H, and glycerol as electron donors and sulfate, thiosulfate, and sulfite as electron acceptors. The major fatty acids of the strain IOR2 were iso-C, iso-C, ante-iso-C, and summed feature 9 (C methyl/iso-Cω9c). Both the strains IOR2 and BLaC1 could grow with CO and H as the sole sources of carbon and energy, respectively. Genomic evidence for the Wood-Ljungdahl pathway in both the strains reflects chemolithoautotrophic growth. The DNA G + C content of the strain IOR2 and BLaC1 was 58.1-60.5 mol%. Based on the results of the phylogenetic and physiologic studies, Paradesulfovibrio onnuriensis gen. nov., sp. nov. with the type strain IOR2 (= KCTC 15845 = MCCC 1K04559) was proposed to be a member of the family Desulfovibrionaceae. We have also proposed the reclassification of D. senegalensis as Paradesulfovibrio senegalensis comb. nov.
一株新发现的深海热液喷口(OVF,Onnuri 喷口场)中分离到的厌氧、杆状、嗜中温、化能自养、硫酸盐还原细菌 IOR2 菌株,位于印度洋中脊(11°24'88″ S 66°25'42″ E,水深 2021 米)。16S rRNA 基因序列分析表明,菌株 IOR2 与 Senegalensis BLaC1(96.7%)最为密切相关。然而,它与 Desulfovibrionaceae 家族的成员如 Tunisiensis RB22(94.0%)、Brasiliensis LVform1(93.9%)、Halophilus DSM 5663(93.7%)和 Pseudodesulfovibrio aespoeensis Aspo-2(93.2%)的相似度较低。菌株 IOR2 可在 23-42°C(最佳 37°C)、pH5.0-8.0(最佳 pH7.0)和 0.5-6.5%(最佳 3.0%)NaCl 下生长。该菌株可利用乳酸盐、丙酮酸盐、H 和甘油作为电子供体,硫酸盐、硫代硫酸盐和亚硫酸盐作为电子受体。菌株 IOR2 的主要脂肪酸为 iso-C、iso-C、ante-iso-C 和总和特征 9(C 甲基/iso-Cω9c)。IOR2 株和 BLaC1 株均可分别以 CO 和 H 作为唯一的碳源和能源进行生长。两株菌的基因组证据均表明 Wood-Ljungdahl 途径为化能自养生长。菌株 IOR2 和 BLaC1 的 DNA G + C 含量为 58.1-60.5mol%。基于系统发育和生理研究结果,提出了一个新的属 Paradesulfovibrio onnuriensis gen. nov.,sp. nov.,其模式菌株为 IOR2(=KCTC 15845=MCCC 1K04559),属于 Desulfovibrionaceae 家族。我们还建议将 Senegalensis 重新分类为 Paradesulfovibrio senegalensis comb. nov.