Bidzhieva Salimat K, Tourova Tatyana P, Grouzdev Denis S, Samigullina Salima R, Sokolova Diyana S, Poltaraus Andrey B, Avtukh Alexander N, Tereshina Vera M, Mardanov Andrey V, Zhaparov Nurlan S, Nazina Tamara N
Winogradsky Institute of Microbiology, Research Center of Biotechnology, Russian Academy of Sciences, Moscow 119071, Russia.
SciBear OU, Tartu mnt 67/1-13b, 10115 Tallinn, Estonia.
Microorganisms. 2024 Dec 11;12(12):2552. doi: 10.3390/microorganisms12122552.
Sulfidogenic bacteria cause numerous issues in the oil industry since they produce sulfide, corroding steel equipment, reducing oil quality, and worsening the environmental conditions in oil fields. The purpose of this work was to isolate and taxonomically identify the sulfidogenic bacteria responsible for the corrosion of steel equipment at the Karazhanbas oil field (Kazakhstan). In this study, we characterized five sulfidogenic strains of the genera , , and isolated from the formation water of the Karazhanbas oil field (Kazakhstan). Sulfate-reducing strain 9FUS revealed 98.9% similarity of the 16S rRNA gene sequence with the closely related strain '' 5S69 and was studied in detail to enhance the taxonomic resolution. Strain 9FUS grew optimally at 23-28 °C, pH 6.5, and 0-2% (/) NaCl. The strain used lactate, pyruvate, methanol, ethanol, fructose, ribose, and H/CO (in the presence of acetate) as carbon and energy sources for sulfate reduction. -C ω11, C, -C, and C were the predominant fatty acids. The genome is 4.20 Mbp with a G + C content of 64.0%. The average nucleotide identity and digital DNA-DNA hybridization values with spp. genomes were 72.5-91.6% (<95%) and 18.5-45.0% (<70%), respectively, and supported our conclusion that 9FUS (=VKM B-3654 = KCTC 25498) belonged to a novel species, for which the name sp. nov. is proposed. Pangenome analysis of sixteen species and functional annotation analysis of identified genes revealed complete modules of enzymes of the main metabolic pathways, characteristic of bacteria of this genus, and unique genes highlighting the adaptations of strain 9FUS in carbohydrate metabolism, nutrient uptake, and environmental stress response. Isolation of these strains expands our understanding of the diversity of sulfidogens in oil reservoirs and can be used to test the effectiveness of biocides used in an oil field.
产硫化物细菌给石油工业带来了诸多问题,因为它们会产生硫化物,腐蚀钢铁设备,降低石油质量,并恶化油田的环境条件。这项工作的目的是分离并从分类学上鉴定出负责哈萨克斯坦卡拉扎巴什油田钢铁设备腐蚀的产硫化物细菌。在本研究中,我们对从哈萨克斯坦卡拉扎巴什油田地层水中分离出的属于 、 和 属的五株产硫化物菌株进行了表征。硫酸盐还原菌株9FUS的16S rRNA基因序列与密切相关的菌株“ ”5S69显示出98.9%的相似性,并对其进行了详细研究以提高分类分辨率。菌株9FUS在23 - 28°C、pH 6.5和0 - 2%(/)NaCl条件下生长最佳。该菌株利用乳酸、丙酮酸、甲醇、乙醇、果糖、核糖和H/CO(在有乙酸盐存在的情况下)作为碳源和能源进行硫酸盐还原。 -C ω11、C、 -C和C是主要脂肪酸。基因组大小为4.20 Mbp,G + C含量为64.0%。与 属物种基因组的平均核苷酸同一性和数字DNA - DNA杂交值分别为72.5 - 91.6%(<95%)和18.5 - 45.0%(<70%),支持了我们的结论,即9FUS(=VKM B - 3654 = KCTC 25498)属于一个新的 物种,为此提出了新物种名称 sp. nov.。对十六个 属物种的泛基因组分析和已鉴定基因的功能注释分析揭示了主要代谢途径酶的完整模块,这是该属细菌的特征,以及突出菌株9FUS在碳水化合物代谢、营养吸收和环境应激反应方面适应性的独特基因。这些菌株的分离扩展了我们对油藏中产硫化物菌多样性的理解,并可用于测试油田中使用的杀菌剂的有效性。