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运用计算靶点筛选法鉴定贝母碱治疗咳嗽的分子机制

Identification of the Molecular Mechanisms of Peimine in the Treatment of Cough Using Computational Target Fishing.

作者信息

Zhang Lihua, Cui Mingchao, Chen Shaojun

机构信息

Department of Food Science, Zhejiang Pharmaceutical College, Ningbo 315000, China.

Department of Traditional Chinese Medicine, Zhejiang Pharmaceutical College, Ningbo 315000, China.

出版信息

Molecules. 2020 Mar 2;25(5):1105. doi: 10.3390/molecules25051105.

Abstract

Peimine (also known as verticine) is the major bioactive and characterized compound of , a traditional Chinese medicine that is most frequently used to relieve a cough. Nevertheless, its molecular targets and mechanisms of action for cough are still not clear. In the present study, potential targets of peimine for cough were identified using computational target fishing combined with manual database mining. In addition, protein-protein interaction (PPI), gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed using, GeneMANIA and Database for Annotation, Visualization and Integrated Discovery (DAVID) databases respectively. Finally, an interaction network of drug-targets-pathways was constructed using Cytoscape. The results identified 23 potential targets of peimine associated with cough, and suggested that MAPK1, AKT1 and PPKCB may be important targets of pemine for the treatment of cough. The functional annotations of protein targets were related to the regulation of immunological and neurological function through specific biological processes and related pathways. A visual representation of the multiple targets and pathways that form a network underlying the systematic actions of peimine was generated. In summary, peimine is predicted to exert its systemic pharmacological effects on cough by targeting a network composed of multiple proteins and pathways.

摘要

浙贝母碱(也称为浙贝甲素)是一种常用于止咳的传统中药的主要生物活性和特征性化合物。然而,其治疗咳嗽的分子靶点和作用机制仍不清楚。在本研究中,采用计算靶点筛选结合手动数据库挖掘的方法确定了浙贝母碱治疗咳嗽的潜在靶点。此外,分别使用GeneMANIA和注释、可视化与整合发现数据库(DAVID)进行蛋白质-蛋白质相互作用(PPI)、基因本体(GO)和京都基因与基因组百科全书(KEGG)通路富集分析。最后,使用Cytoscape构建了药物-靶点-通路相互作用网络。结果确定了23个与咳嗽相关的浙贝母碱潜在靶点,并提示丝裂原活化蛋白激酶1(MAPK1)、蛋白激酶B(AKT1)和蛋白激酶Cβ(PPKCB)可能是浙贝母碱治疗咳嗽的重要靶点。蛋白质靶点的功能注释通过特定的生物学过程和相关通路与免疫和神经功能的调节有关。生成了一个由多个靶点和通路构成的网络的可视化表示,该网络是浙贝母碱系统作用的基础。总之,预计浙贝母碱通过靶向一个由多种蛋白质和通路组成的网络对咳嗽发挥其全身药理作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcdf/7179178/ae1feda4cd9f/molecules-25-01105-g001.jpg

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