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全基因组鉴定和肌动蛋白解聚因子(ADF)家族基因的特征分析及 L. 对各种胁迫响应的表达分析

Genome-Wide Identification and Characterization of Actin-Depolymerizing Factor () Family Genes and Expression Analysis of Responses to Various Stresses in L.

机构信息

The State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou 510642, China.

College of Agriculture and Biology, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, China.

出版信息

Int J Mol Sci. 2020 Mar 4;21(5):1751. doi: 10.3390/ijms21051751.

DOI:10.3390/ijms21051751
PMID:32143437
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7084653/
Abstract

Actin-depolymerizing factor (ADF) is a small class of actin-binding proteins that regulates the dynamics of actin in cells. Moreover, it is well known that the plant ADF family plays key roles in growth, development and defense-related functions. Results: Thirteen maize ( L., ZmADFs) ADF genes were identified using Hidden Markov Model. Phylogenetic analysis indicated that the 36 identified ADF genes in , and were clustered into five groups. Four pairs of segmental genes were found in the maize ADF gene family. The tissue-specific expression of ZmADFs and OsADFs was analyzed using microarray data obtained from the Maize and Rice eFP Browsers. Five ZmADFs () from group V exhibited specifically high expression in tassel, pollen, and anther. The expression patterns of 13 ZmADFs in seedlings under five abiotic stresses were analyzed using qRT-PCR, and we found that the ADFs mainly responded to heat, salt, drought, and ABA. Conclusions: In our study, we identified ADF genes in maize and analyzed the gene structure and phylogenetic relationships. The results of expression analysis demonstrated that the expression level of ADF genes was diverse in various tissues and different stimuli, including abiotic and phytohormone stresses, indicating their different roles in plant growth, development, and response to external stimulus. This report extends our knowledge to understand the function of ADF genes in maize.

摘要

肌动蛋白解聚因子(ADF)是一类调节细胞中肌动蛋白动态的肌动蛋白结合蛋白。此外,众所周知,植物 ADF 家族在生长、发育和防御相关功能中发挥着关键作用。结果:使用隐马尔可夫模型鉴定了 13 个玉米(L.,ZmADFs)ADF 基因。系统发育分析表明,在 、 和 中鉴定的 36 个 ADF 基因聚类为 5 组。在玉米 ADF 基因家族中发现了 4 对片段基因。使用从玉米和水稻 eFP 浏览器获得的微阵列数据分析了 ZmADFs 和 OsADFs 的组织特异性表达。第 V 组的 5 个 ZmADFs()在玉米穗、花粉和花药中特异性高表达。使用 qRT-PCR 分析了 13 个 ZmADFs 在幼苗对五种非生物胁迫下的表达模式,我们发现 ADFs 主要响应热、盐、干旱和 ABA。结论:在我们的研究中,我们鉴定了玉米中的 ADF 基因,并分析了基因结构和系统发育关系。表达分析的结果表明,ADF 基因在不同组织和不同刺激下的表达水平存在差异,包括非生物和植物激素胁迫,表明它们在植物生长、发育和对外界刺激的反应中具有不同的作用。本报告扩展了我们对玉米 ADF 基因功能的认识。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fd2/7084653/c311cf595131/ijms-21-01751-g006a.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fd2/7084653/349f6a151e2f/ijms-21-01751-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fd2/7084653/2e0f5061f29d/ijms-21-01751-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fd2/7084653/e464110b16a6/ijms-21-01751-g003.jpg
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