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花生(Arachis hypogaea L.)中单糖转运蛋白(MST)基因家族的全基因组鉴定、表达及关联分析

Genome-wide identification, expression, and association analysis of the monosaccharide transporter (MST) gene family in peanut ( L.).

作者信息

Wan Liyun, Ren Weifang, Miao Haocui, Zhang Juncheng, Fang Jiahai

机构信息

1Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, China.

Southern Regional Collaborative Innovation Center for Grain and Oil Crops in China, Nanchang, China.

出版信息

3 Biotech. 2020 Mar;10(3):130. doi: 10.1007/s13205-020-2123-8. Epub 2020 Feb 21.

Abstract

In this study, we reported the genome-wide analysis of the whole sugar transporter gene family of a legume species, peanut ( L.), including the chromosome locations, gene structures, phylogeny, expression patterns, as well as comparative genomic analysis with Arabidopsis, rice, grape, and soybean. A total of 76 AhMST genes () were identified from the peanut genome and located unevenly in 20 chromosomes. Phylogeny analysis indicated that the AhMSTs can be divided into eight groups including two undefined peanut-specific groups. Transcriptional profiles revealed that many AhMST genes showed tissue-specific expression, the majority of the AhMST genes mainly expressed in sink organs and floral organ of peanut. Chromosome distribution pattern and synteny analysis strongly indicated that genome-wide segmental and tandem duplication contributed to the expansion of peanut MST genes. Four common orthologs (, , , and ) between peanut and the other four species were identified by comparative genomic analysis, which might play important roles in maintaining the growth and development of plant. Furthermore, four polymorphic sites in , , and were significantly correlated with hundred pod weight (HPW) and hundred seed weight (HSW) by association analysis. In a word, these results will provide new insights for understanding the functions of AhMST family members to sugar transporting and the potential for yield improvement in peanut.

摘要

在本研究中,我们报道了豆科植物花生(Arachis hypogaea L.)全糖转运蛋白基因家族的全基因组分析,包括染色体定位、基因结构、系统发育、表达模式,以及与拟南芥、水稻、葡萄和大豆的比较基因组分析。从花生基因组中总共鉴定出76个AhMST基因(Arachis hypogaea monosaccharide transporter),它们不均匀地分布在20条染色体上。系统发育分析表明,AhMSTs可分为八组,包括两个未定义的花生特异性组。转录谱显示,许多AhMST基因表现出组织特异性表达,大多数AhMST基因主要在花生的库器官和花器官中表达。染色体分布模式和共线性分析有力地表明,全基因组片段重复和串联重复促成了花生MST基因的扩张。通过比较基因组分析,在花生与其他四个物种之间鉴定出四个共同的直系同源基因(AhMST1, AhMST2, AhMST3和AhMST4),它们可能在维持植物生长发育中发挥重要作用。此外,通过关联分析,AhMST1、AhMST2和AhMST3中的四个多态性位点与百果重(HPW)和百粒重(HSW)显著相关。总之,这些结果将为理解AhMST家族成员在糖转运中的功能以及花生产量提高的潜力提供新的见解。

相似文献

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Global Survey, Expressions and Association Analysis of Genes in Peanut.花生基因的全球调查、表达及关联分析
Front Genet. 2022 Mar 9;13:821163. doi: 10.3389/fgene.2022.821163. eCollection 2022.

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