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sp. nov.,从人类耶尔森菌病病例中分离得到。

sp. nov., isolated from a human yersiniosis case.

机构信息

UCD-Centre for Food Safety, School of Public Health, Physiotherapy & Sports Science, University College Dublin, Belfield, Dublin D04 N2E5, Ireland.

National Infection Services, Public Health England, 61 Colindale Avenue, London NW9 5HT, UK.

出版信息

Int J Syst Evol Microbiol. 2020 Apr;70(4):2382-2387. doi: 10.1099/ijsem.0.004047. Epub 2020 Mar 11.

DOI:10.1099/ijsem.0.004047
PMID:32160143
Abstract

A Gram-negative rod from the genus was isolated from a clinical case of yersiniosis in the United Kingdom. Long read sequencing data from an Oxford Nanopore Technologies (ONT) MinION in conjunction with Illumina HiSeq reads were used to generate a finished quality genome of this strain. Overall Genome Related Index (OGRI) of the strain was used to determine that it was a novel species within , despite biochemical similarities to . The 16S ribosomal RNA gene accessions are MN434982-MN434987 and the accession number for the complete and closed chromosome is CP043727. The type strain is SRR7544370 (=NCTC 14382/=LMG 31573).

摘要

从英国的一起耶尔森菌病临床病例中分离到一株属于的革兰氏阴性杆菌。使用牛津纳米孔技术(ONT)MinION 的长读测序数据和 Illumina HiSeq 读数生成了该菌株的完整高质量基因组。该菌株的整体基因组相关性指数(OGRI)表明,尽管与生化相似,但它是 内的一个新物种。16S 核糖体 RNA 基因的登录号为 MN434982-MN434987,完整封闭染色体的登录号为 CP043727。模式株为 SRR7544370 (=NCTC 14382/=LMG 31573)。

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