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豆类 UGT 基因超家族的进化历史重建阐明了特化代谢中重复基因的功能分化。

Reconstruction of the Evolutionary Histories of UGT Gene Superfamily in Legumes Clarifies the Functional Divergence of Duplicates in Specialized Metabolism.

机构信息

Institute of Crop Science, NARO, 2-1-2 Kannondai, Tsukuba 305-8518, Japan.

Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan.

出版信息

Int J Mol Sci. 2020 Mar 8;21(5):1855. doi: 10.3390/ijms21051855.

DOI:10.3390/ijms21051855
PMID:32182686
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7084467/
Abstract

Plant uridine 5'-diphosphate glycosyltransferases (UGTs) influence the physiochemical properties of several classes of specialized metabolites including triterpenoids via glycosylation. To uncover the evolutionary past of UGTs of soyasaponins (a group of beneficial triterpene glycosides widespread among Leguminosae), the UGT gene superfamily in , , , and genomes were systematically mined. A total of 834 nonredundant UGTs were identified and categorized into 98 putative orthologous loci (POLs) using tree-based and graph-based methods. Major key findings in this study were of, (i) 17 POLs represent potential catalysts for triterpene glycosylation in legumes, (ii) UGTs responsible for the addition of second (: galactosyltransferase and : arabinosyltransferase) and third (: rhamnosyltransferase and : glucosyltransferase) sugars of the C-3 sugar chain of soyasaponins were resulted from duplication events occurred before and after the hologalegina-millettoid split, respectively, and followed neofunctionalization in species-/ lineage-specific manner, and (iii) UGTs responsible for the C-22- glycosylation of group A (arabinosyltransferase) and DDMP saponins (DDMPtransferase) and the second sugar of C-22 sugar chain of group A saponins (: glucosyltransferase) may all share a common ancestor. Our findings showed a way to trace the evolutionary history of UGTs involved in specialized metabolism.

摘要

植物尿苷 5′-二磷酸糖基转移酶(UGTs)通过糖基化影响包括三萜类在内的几类特殊代谢物的理化性质。为了揭示大豆皂素(一类广泛存在于豆科植物中的有益三萜糖苷)UGTs 的进化历史,系统挖掘了 、 、 、 和 基因组中的 UGT 基因超家族。利用基于树和基于图的方法,共鉴定出 834 个非冗余 UGT,并将其分为 98 个假定的直系同源基因座(POLs)。本研究的主要发现有:(i)17 个 POL 代表豆科植物中三萜糖基化的潜在催化剂,(ii)负责添加三萜皂苷 C-3 糖链上第二个(:半乳糖基转移酶和:阿拉伯糖基转移酶)和第三个(:鼠李糖基转移酶和:葡萄糖基转移酶)糖的 UGTs 是在全息麦列体-小米分裂之前和之后发生的复制事件的结果,随后以种/谱系特异性的方式发生了新功能化,以及(iii)负责 A 组(阿拉伯糖基转移酶)和 DDMP 皂苷的 C-22 糖基化以及 A 组皂苷 C-22 糖链上第二个糖(:葡萄糖基转移酶)的 UGTs 可能都有一个共同的祖先。我们的研究结果为追踪参与特殊代谢的 UGTs 的进化历史提供了一种方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7421/7084467/dfd74c538cd5/ijms-21-01855-g006.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7421/7084467/09ebd3a7a4dd/ijms-21-01855-g002.jpg
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