Schwob Guillaume, Cabrol Léa, Poulin Elie, Orlando Julieta
Laboratorio de Ecología Molecular, Instituto de Ecología y Biodiversidad, Facultad de Ciencias, Universidad de Chile, Santiago, Chile.
Laboratorio de Ecología Microbiana, Departamento de Ciencias Ecológicas, Facultad de Ciencias, Universidad de Chile, Santiago, Chile.
Front Microbiol. 2020 Feb 28;11:308. doi: 10.3389/fmicb.2020.00308. eCollection 2020.
is an irregular sea urchin species that inhabits shallow waters of South Georgia and South Shetlands Islands. As a deposit-feeder, nutrition relies on the ingestion of the surrounding sediment in which it lives barely burrowed. Despite the low complexity of its feeding habit, it harbors a long and twice-looped digestive tract suggesting that it may host a complex bacterial community. Here, we characterized the gut microbiota of specimens from two populations at the south of the King George Island in the West Antarctic Peninsula. Using a metabarcoding approach targeting the 16S rRNA gene, we characterized the microbiota composition and putative functional capacity, evaluating its differentiation among the gut content and the gut tissue in comparison with the external sediment. Additionally, we aimed to define a core gut microbiota between populations to identify potential keystone bacterial taxa. Our results show that the diversity and the composition of the microbiota, at both genetic and predicted functional levels, were mostly driven by the sample type, and to a lesser extent by the population location. Specific bacterial taxa, belonging mostly to and , were differently enriched in the gut content and the gut tissue, respectively. Predictive functional profiles revealed higher abundance of specific pathways, as the sulfur cycle in the gut content and the amino acid metabolism, in the gut tissue. Further, the definition of a core microbiota allowed to obtain evidence of specific localization of bacterial taxa and the identification of potential keystone taxa assigned to the and genera as potentially host selected. The ecological relevance of these keystone taxa in the host metabolism is discussed.
是一种不规则海胆物种,栖息于南乔治亚岛和南设得兰群岛的浅水区。作为一种沉积取食者,其营养依赖于摄取其生活的周围沉积物,它几乎不怎么钻洞。尽管其摄食习性的复杂性较低,但它拥有一条长且有两个环的消化道,这表明它可能拥有一个复杂的细菌群落。在这里,我们对来自南极半岛西部乔治王岛南部两个种群的样本的肠道微生物群进行了表征。使用针对16S rRNA基因的元条形码方法,我们表征了微生物群的组成和假定的功能能力,评估了其在肠道内容物和肠道组织之间与外部沉积物相比的差异。此外,我们旨在确定种群之间的核心肠道微生物群,以识别潜在的关键细菌类群。我们的结果表明,在基因和预测功能水平上,微生物群的多样性和组成主要由样本类型驱动,在较小程度上由种群位置驱动。分别属于 和 的特定细菌类群在肠道内容物和肠道组织中富集程度不同。预测功能谱显示特定途径的丰度更高,如肠道内容物中的硫循环和肠道组织中的氨基酸代谢。此外,核心微生物群的定义使我们能够获得细菌类群特定定位的证据,并识别出分配给 和 属的潜在关键类群,这些类群可能是宿主选择的。讨论了这些关键类群在宿主代谢中的生态相关性。