Xu Yue, Xu Wen-Hao, Yang Xiao-Long, Zhang Hai-Liang, Zhang Xiao-Feng
Department of Ophthalmology, The First Affiliated Hospital of Soochow University, Suzhou, Jiangsu 215000, P.R. China.
Department of Ophthalmology, Soochow University Medical College, Soochow University, Suzhou, Jiangsu 215000, P.R. China.
Oncol Lett. 2020 Mar;19(3):1771-1780. doi: 10.3892/ol.2020.11301. Epub 2020 Jan 14.
Fatty acid-binding protein 5 (), which participates in mediating the biological properties of tumor cells, has been recognized in several neoplasms. The present study aims to investigate transcriptional expression profiles, reveal its underlying biological interaction networks and define its prognostic value in uveal melanoma (UVM). A total of 80 patients with UVM and their RNA-sequence data, available from The Cancer Genome Atlas (TCGA) database, was analyzed. A differential transcriptional expression profile was obtained from TCGA and the Oncomine databases. The survival benefits were analyzed using the Kaplan-Meier method and log-rank test. The correlation between expression and immune infiltration level was analyzed using the Tumor Immune Estimation Resource database. Functional enrichment analyses using Gene Ontology, Kyoto Encyclopedia of Genes and Genomes, and signaling hallmarks were utilized to describe the biological process, molecular functions, cellular component and significantly involved pathways. The elevated transcriptional expression of was significantly associated with shorter overall survival (OS) and worse progression-free survival (PFS) times in patients with UVM (P<0.001). Moreover, expression was significantly and positively correlated with tumor purity and CD8 T cells and was negatively correlated with the infiltrating levels of CD4 T cells and neutrophils. Gene Set Enrichment Analysis was performed to obtain 100 significantly associated genes of and was found to be critical in several hallmark pathways, including allograft rejection, complement, interleukin-6/Janus kinase-STAT3 signaling, interferon γ response, inflammatory response and tumor necrosis factor α signaling via NFκB. The present study is the first to demonstrate that expression was positively associated with progression-associated clinicopathological factors and poor prognosis in UVM, which suggests its likely function as an oncogene and prognostic marker in patients with UVM.
脂肪酸结合蛋白5(FABP5)参与介导肿瘤细胞的生物学特性,已在多种肿瘤中被发现。本研究旨在调查FABP5的转录表达谱,揭示其潜在的生物相互作用网络,并确定其在葡萄膜黑色素瘤(UVM)中的预后价值。对来自癌症基因组图谱(TCGA)数据库的80例UVM患者及其RNA序列数据进行了分析。从TCGA和Oncomine数据库获得了差异转录表达谱。使用Kaplan-Meier方法和对数秩检验分析生存获益情况。使用肿瘤免疫估计资源数据库分析FABP5表达与免疫浸润水平之间的相关性。利用基因本体论、京都基因与基因组百科全书和信号特征进行功能富集分析,以描述生物学过程、分子功能、细胞成分和显著涉及的途径。FABP5转录表达升高与UVM患者较短的总生存期(OS)和较差的无进展生存期(PFS)显著相关(P<0.001)。此外,FABP5表达与肿瘤纯度和CD8 T细胞显著正相关,与CD4 T细胞和中性粒细胞的浸润水平负相关。进行基因集富集分析以获得FABP5的100个显著相关基因,发现FABP5在几个标志性途径中至关重要,包括同种异体移植排斥、补体、白细胞介素-6/Janus激酶-信号转导和转录激活因子3信号传导、干扰素γ反应、炎症反应以及通过核因子κB的肿瘤坏死因子α信号传导。本研究首次证明FABP5表达与UVM中与进展相关的临床病理因素和不良预后呈正相关,这表明其可能作为UVM患者的癌基因和预后标志物发挥作用。