Department of Surgery, University of Texas Southwestern Medical Center, Dallas, Texas.
Department of Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio.
Cancer Res. 2020 Jun 1;80(11):2114-2124. doi: 10.1158/0008-5472.CAN-19-2918. Epub 2020 Apr 8.
Hispanic/Latino patients have a higher incidence of gastric cancer and worse cancer-related outcomes compared with patients of other backgrounds. Whether there is a molecular basis for these disparities is unknown, as very few Hispanic/Latino patients have been included in previous studies. To determine the genomic landscape of gastric cancer in Hispanic/Latino patients, we performed whole-exome sequencing (WES) and RNA sequencing on tumor samples from 57 patients; germline analysis was conducted on 83 patients. The results were compared with data from Asian and White patients published by The Cancer Genome Atlas. Hispanic/Latino patients had a significantly larger proportion of genomically stable subtype tumors compared with Asian and White patients (65% vs. 21% vs. 20%, < 0.001). Transcriptomic analysis identified molecular signatures that were prognostic. Of the 43 Hispanic/Latino patients with diffuse-type cancer, 7 (16%) had germline variants in . Variant carriers were significantly younger than noncarriers (41 vs. 50 years, < 0.05). algorithms predicted five variants to be deleterious. For two variants that were predicted to be benign, modeling demonstrated that these mutations conferred increased migratory capability, suggesting pathogenicity. Hispanic/Latino patients with gastric cancer possess unique genomic landscapes, including a high rate of germline variants that may partially explain their aggressive clinical phenotypes. Individualized screening, genetic counseling, and treatment protocols based on patient ethnicity and race may be necessary. SIGNIFICANCE: Gastric cancer in Hispanic/Latino patients has unique genomic profiles that may contribute to the aggressive clinical phenotypes seen in these patients.
与其他背景的患者相比,西班牙裔/拉丁裔患者的胃癌发病率更高,癌症相关结局更差。由于之前的研究很少纳入西班牙裔/拉丁裔患者,因此这些差异是否存在分子基础尚不清楚。为了确定西班牙裔/拉丁裔患者胃癌的基因组图谱,我们对 57 名患者的肿瘤样本进行了全外显子组测序(WES)和 RNA 测序;对 83 名患者进行了种系分析。将结果与癌症基因组图谱公布的亚洲和白人患者的数据进行了比较。与亚洲和白人患者相比,西班牙裔/拉丁裔患者具有更大比例的基因组稳定型肿瘤(65%比 21%比 20%, < 0.001)。转录组分析确定了具有预后意义的分子特征。在 43 名弥漫型胃癌的西班牙裔/拉丁裔患者中,有 7 名(16%)存在. 种系变异。变异携带者明显比非携带者年轻(41 岁比 50 岁, < 0.05)。 算法预测了 5 个变体是有害的。对于两个被预测为良性的变体, 建模表明这些突变赋予了更高的迁移能力,表明了致病性。患有胃癌的西班牙裔/拉丁裔患者具有独特的基因组图谱,包括. 种系变异的高发生率,这可能部分解释了他们侵袭性的临床表型。基于患者的种族和民族进行个体化筛查、遗传咨询和治疗方案可能是必要的。意义:西班牙裔/拉丁裔患者的胃癌具有独特的基因组特征,可能导致这些患者出现侵袭性的临床表型。