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Clinical features and cancer risk in families with pathogenic variants irrespective of clinical criteria.无论是否符合临床标准,具有致病性变异的家族的临床特征和癌症风险。
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Integrated Analysis of Genetic Ancestry and Genomic Alterations across Cancers.跨癌种的遗传祖源与基因组改变的综合分析。
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Reliable Pan-Cancer Microsatellite Instability Assessment by Using Targeted Next-Generation Sequencing Data.利用靶向二代测序数据进行可靠的泛癌微卫星不稳定性评估
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西班牙裔/拉丁裔胃腺癌患者具有独特的分子特征,包括较高的种系变异率。

Hispanic/Latino Patients with Gastric Adenocarcinoma Have Distinct Molecular Profiles Including a High Rate of Germline Variants.

机构信息

Department of Surgery, University of Texas Southwestern Medical Center, Dallas, Texas.

Department of Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio.

出版信息

Cancer Res. 2020 Jun 1;80(11):2114-2124. doi: 10.1158/0008-5472.CAN-19-2918. Epub 2020 Apr 8.

DOI:10.1158/0008-5472.CAN-19-2918
PMID:32269045
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7489496/
Abstract

Hispanic/Latino patients have a higher incidence of gastric cancer and worse cancer-related outcomes compared with patients of other backgrounds. Whether there is a molecular basis for these disparities is unknown, as very few Hispanic/Latino patients have been included in previous studies. To determine the genomic landscape of gastric cancer in Hispanic/Latino patients, we performed whole-exome sequencing (WES) and RNA sequencing on tumor samples from 57 patients; germline analysis was conducted on 83 patients. The results were compared with data from Asian and White patients published by The Cancer Genome Atlas. Hispanic/Latino patients had a significantly larger proportion of genomically stable subtype tumors compared with Asian and White patients (65% vs. 21% vs. 20%, < 0.001). Transcriptomic analysis identified molecular signatures that were prognostic. Of the 43 Hispanic/Latino patients with diffuse-type cancer, 7 (16%) had germline variants in . Variant carriers were significantly younger than noncarriers (41 vs. 50 years, < 0.05). algorithms predicted five variants to be deleterious. For two variants that were predicted to be benign, modeling demonstrated that these mutations conferred increased migratory capability, suggesting pathogenicity. Hispanic/Latino patients with gastric cancer possess unique genomic landscapes, including a high rate of germline variants that may partially explain their aggressive clinical phenotypes. Individualized screening, genetic counseling, and treatment protocols based on patient ethnicity and race may be necessary. SIGNIFICANCE: Gastric cancer in Hispanic/Latino patients has unique genomic profiles that may contribute to the aggressive clinical phenotypes seen in these patients.

摘要

与其他背景的患者相比,西班牙裔/拉丁裔患者的胃癌发病率更高,癌症相关结局更差。由于之前的研究很少纳入西班牙裔/拉丁裔患者,因此这些差异是否存在分子基础尚不清楚。为了确定西班牙裔/拉丁裔患者胃癌的基因组图谱,我们对 57 名患者的肿瘤样本进行了全外显子组测序(WES)和 RNA 测序;对 83 名患者进行了种系分析。将结果与癌症基因组图谱公布的亚洲和白人患者的数据进行了比较。与亚洲和白人患者相比,西班牙裔/拉丁裔患者具有更大比例的基因组稳定型肿瘤(65%比 21%比 20%, < 0.001)。转录组分析确定了具有预后意义的分子特征。在 43 名弥漫型胃癌的西班牙裔/拉丁裔患者中,有 7 名(16%)存在. 种系变异。变异携带者明显比非携带者年轻(41 岁比 50 岁, < 0.05)。 算法预测了 5 个变体是有害的。对于两个被预测为良性的变体, 建模表明这些突变赋予了更高的迁移能力,表明了致病性。患有胃癌的西班牙裔/拉丁裔患者具有独特的基因组图谱,包括. 种系变异的高发生率,这可能部分解释了他们侵袭性的临床表型。基于患者的种族和民族进行个体化筛查、遗传咨询和治疗方案可能是必要的。意义:西班牙裔/拉丁裔患者的胃癌具有独特的基因组特征,可能导致这些患者出现侵袭性的临床表型。