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通过 CRISPR 干扰介导的 Komagataeibacter xylinus CGMCC 2955 中 galU 的下调来定制细菌纤维素结构。

Tailoring bacterial cellulose structure through CRISPR interference-mediated downregulation of galU in Komagataeibacter xylinus CGMCC 2955.

机构信息

State Key Laboratory of Food Nutrition & Safety, Tianjin University of Science & Technology, Tianjin, China.

Key Laboratory of Industrial Fermentation Microbiology (Ministry of Education), Tianjin University of Science & Technology, Tianjin, China.

出版信息

Biotechnol Bioeng. 2020 Jul;117(7):2165-2176. doi: 10.1002/bit.27351. Epub 2020 Apr 17.

Abstract

Diverse applications of bacterial cellulose (BC) have different requirements in terms of its structural characteristics. culturing Komagataeibacter xylinus CGMCC 2955, BC structure changes with alterations in oxygen tension. Here, the K. xylinus CGMCC 2955 transcriptome was analyzed under different oxygen tensions. Transcriptome and genome analysis indicated that BC structure is related to the rate of BC synthesis and cell growth, and galU is an essential gene that controls the carbon metabolic flux between the BC synthesis pathway and the pentose phosphate (PP) pathway. The CRISPR interference (CRISPRi) system was utilized in K. xylinus CGMCC 2955 to control the expression levels of galU. By overexpressing galU and interfering with different sites of galU sequences using CRISPRi, we obtained strains with varying expression levels of galU (3.20-3014.84%). By testing the characteristics of BC, we found that the porosity of BC (range: 62.99-90.66%) was negative with galU expression levels. However, the crystallinity of BC (range: 56.25-85.99%) was positive with galU expression levels; galU expression levels in engineered strains were lower than those in the control strains. Herein, we propose a new method for regulating the structure of BC to provide a theoretical basis for its application in different fields.

摘要

细菌纤维素 (BC) 的多种应用在其结构特性方面有不同的要求。培养木醋杆菌 CGMCC 2955 时,BC 的结构会随着氧张力的变化而改变。在这里,分析了不同氧张力下 K. xylinus CGMCC 2955 的转录组。转录组和基因组分析表明,BC 结构与 BC 合成和细胞生长的速度有关,而 galU 是控制 BC 合成途径和戊糖磷酸 (PP) 途径之间碳代谢通量的必需基因。在 K. xylinus CGMCC 2955 中使用 CRISPR 干扰 (CRISPRi) 系统来控制 galU 的表达水平。通过过表达 galU 和使用 CRISPRi 干扰 galU 序列的不同位点,我们获得了 galU 表达水平不同的菌株(3.20-3014.84%)。通过测试 BC 的特性,我们发现 BC 的孔隙率(范围:62.99-90.66%)与 galU 的表达水平呈负相关。然而,BC 的结晶度(范围:56.25-85.99%)与 galU 的表达水平呈正相关;工程菌株中的 galU 表达水平低于对照菌株。在此,我们提出了一种新的调节 BC 结构的方法,为其在不同领域的应用提供了理论依据。

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