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First Report of Pythium splendens Associated with Severe Wilt of Muskmelon (Cucumis melo) in Oman.与阿曼甜瓜(黄瓜属甜瓜)严重枯萎病相关的华丽腐霉的首次报道。
Plant Dis. 2008 Feb;92(2):313. doi: 10.1094/PDIS-92-2-0313C.
2
Genomic, Network, and Phylogenetic Analysis of the Oomycete Effector Arsenal.卵菌效应子库的基因组、网络和系统发育分析。
mSphere. 2017 Nov 22;2(6). doi: 10.1128/mSphere.00408-17. eCollection 2017 Nov-Dec.
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SECRETOOL: integrated secretome analysis tool for fungi.SECRETOOL:真菌综合分泌组分析工具。
Amino Acids. 2014 Feb;46(2):471-3. doi: 10.1007/s00726-013-1649-z. Epub 2013 Dec 27.
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Pfam: the protein families database.Pfam:蛋白质家族数据库。
Nucleic Acids Res. 2014 Jan;42(Database issue):D222-30. doi: 10.1093/nar/gkt1223. Epub 2013 Nov 27.
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The MaSuRCA genome assembler.马苏尔卡基因组组装器。
Bioinformatics. 2013 Nov 1;29(21):2669-77. doi: 10.1093/bioinformatics/btt476. Epub 2013 Aug 29.
6
Characterization of Pythium Transcriptome and Gene Expression Analysis at Different Stages of Fermentation.腐霉菌转录组的表征及发酵不同阶段的基因表达分析
PLoS One. 2013 Jun 18;8(6):e65552. doi: 10.1371/journal.pone.0065552. Print 2013.
7
QUAST: quality assessment tool for genome assemblies.QUAST:基因组组装质量评估工具。
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
8
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints.奥古斯塔斯:一个用于真核生物基因预测的网络服务器,允许用户定义约束条件。
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W465-7. doi: 10.1093/nar/gki458.

卵菌纲灿烂球囊霉rgcb - 1菌株的基因组序列草图

Draft Genome Sequence of the Oomycete Globisporangium splendens Strain rgcb-1.

作者信息

Reghu Rani Jalajakumari, Chellappan Biju Vadakkemukadiyil, Beena Shenu Hudson, Sasi Anu, Vasudevan Soniya Eppurathu, Nair Achuthsankar Sukumaran

机构信息

Department of Computational Biology and Bioinformatics, University of Kerala, Kariavattom Campus, Trivandrum, Kerala, India

Department of Computational Biology and Bioinformatics, University of Kerala, Kariavattom Campus, Trivandrum, Kerala, India.

出版信息

Microbiol Resour Announc. 2020 Apr 16;9(16):e01006-19. doi: 10.1128/MRA.01006-19.

DOI:10.1128/MRA.01006-19
PMID:32299889
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7163027/
Abstract

(formerly ) is an oomycete pathogen of many economically important vegetable crops. Here, we present the first draft genome of , which comprises 197 scaffolds with a total length of 53.3 Mb and 17,350 predicted protein-coding genes.

摘要

(以前)是许多经济上重要的蔬菜作物的卵菌病原体。在此,我们展示了的首个基因组草图,其由197个支架组成,总长度为53.3兆碱基,预测有17350个蛋白质编码基因。