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从欧洲山毛榉中分离出的卵菌病原体菌株LV007的基因组草图。

Draft genome of the oomycete pathogen strain LV007 isolated from European beech ().

作者信息

Grenville-Briggs Laura J, Kushwaha Sandeep K, Cleary Michelle R, Witzell Johanna, Savenkov Eugene I, Whisson Stephen C, Chawade Aakash, Vetukuri Ramesh R

机构信息

Department of Plant Protection biology, Swedish University of Agricultural Sciences, Alnarp, Sweden.

Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden.

出版信息

Genom Data. 2017 May 12;12:155-156. doi: 10.1016/j.gdata.2017.05.010. eCollection 2017 Jun.

DOI:10.1016/j.gdata.2017.05.010
PMID:28560165
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5435576/
Abstract

is a broad host range phytopathogenic oomycete. strain LV007 was isolated from a diseased European Beech () in Malmö, Sweden in 2016. The draft genome of strain LV007 is 67.81 Mb. It contains 15,567 contigs and 21,876 predicted protein-coding genes. As reported for other phytopathogenic Phytophthora species, cytoplasmic effector proteins including RxLR and CRN families were identified. The genome sequence has been deposited at DDBJ/ENA/GenBank under the accession NBIJ00000000. The version described in this paper is version NBIJ01000000.

摘要

是一种寄主范围广泛的植物病原卵菌。菌株LV007于2016年从瑞典马尔默一棵患病的欧洲山毛榉()中分离得到。菌株LV007的基因组草图为67.81 Mb。它包含15,567个重叠群和21,876个预测的蛋白质编码基因。正如其他植物病原疫霉物种所报道的那样,鉴定出了包括RxLR和CRN家族在内的细胞质效应蛋白。基因组序列已保存在DDBJ/ENA/GenBank中,登录号为NBIJ00000000。本文描述的版本是版本NBIJ01000000。

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