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黄斑芫菁(鞘翅目:芫菁科)线粒体全基因组特征及其对扁甲亚目的系统发育意义

Characterization of the Complete Mitochondrial Genome of Epicauta impressicornis (Coleoptera: Meloidae) and Its Phylogenetic Implications for the Infraorder Cucujiformia.

作者信息

Liu Yang-Yang, Zhou Zhi-Cheng, Chen Xiang-Sheng

机构信息

Institute of Entomology and Special Key Laboratory for Development and Utilization of Insect Resources of Guizhou, Guizhou University, Guiyang, China.

出版信息

J Insect Sci. 2020 Mar 1;20(2). doi: 10.1093/jisesa/ieaa021.

Abstract

The complete mitochondrial genome (mitogenome) of Epicauta impressicornis Pic (Coleoptera: Meloidae) was determined. The circular genome is 15,713-bp long, and encodes 13 protein-coding genes (PCGs), 2 ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes, and a control region (CR). The 13 PCGs start with the typical ATN codon and terminate with the typical stop codon TAA (ND2, ND4L, ND6, ATP6, ATP8, and CYTB), TAG (ND1 and ND3), and T- (COX1, COX2, COX3, ND4, and ND5). The two rRNA genes (rrn12S and rrn16S) are encoded on the minority strand. All tRNAs genes except trnS1 (AGN) are predicted to fold into the typical cloverleaf structure. The longest overlap (10 bp) is observed between ATP8 and ATP6. CR mainly harbors a conserved poly-T stretch (15 bp), a short repeat unit (17 bp), some universal microsatellite-like repeats, and a canonical poly-A tail. Phylogenetic analysis using Bayesian inferences and maximum likelihood based on nucleotide and corresponding amino acid sequences of the 13 PCGs showed that E. impressicornis is closely related to E. chinensis, this relationship is and supported within Cucujiformia belonging to Meloidae (Tenebrionoidea). Our results further confirmed the monophyly of Tenebrionoidea, Lymexyloidea, Curculionoidea, Chrysomeloidea, Cucujoidea, Coccinelloidea, and Cleroidea within Cucujiformia, and revealed the sister relationships of (Cleroidea + Coccinelloidea), (Lymexyloidea + Tenebrionoidea), and ((Chrysomeloidea + Cucujoidea) + Curculionoidea). We believe that the complete mitogenome of E. impressicornis will contribute to further studies on molecular bases for the classification and phylogeny of Meloidae or even Cucujiformia.

摘要

测定了黄斑芫菁(鞘翅目:芫菁科)的完整线粒体基因组(线粒体基因组)。该环状基因组长度为15713 bp,编码13个蛋白质编码基因(PCG)、2个核糖体RNA(rRNA)基因、22个转运RNA(tRNA)基因和一个控制区(CR)。13个PCG以典型的ATN密码子起始,以典型的终止密码子TAA(ND2、ND4L、ND6、ATP6、ATP8和CYTB)、TAG(ND1和ND3)和T -(COX1、COX2、COX3、ND4和ND5)终止。两个rRNA基因(rrn12S和rrn16S)在少数链上编码。除trnS1(AGN)外,所有tRNA基因预计折叠成典型的三叶草结构。在ATP8和ATP6之间观察到最长的重叠(10 bp)。CR主要包含一个保守的多聚T序列(15 bp)、一个短重复单元(17 bp)、一些通用的微卫星样重复序列和一个典型的多聚A尾巴。基于13个PCG的核苷酸和相应氨基酸序列,使用贝叶斯推断和最大似然法进行的系统发育分析表明,黄斑芫菁与中华芫菁密切相关,这种关系在属于芫菁科(拟步甲总科)的扁甲总科中得到支持。我们的结果进一步证实了扁甲总科、长蠹总科、象甲总科、叶甲总科、扁甲总科、瓢甲总科和郭公甲总科在扁甲总科中的单系性,并揭示了(郭公甲总科 + 瓢甲总科)、(长蠹总科 + 拟步甲总科)和((叶甲总科 + 扁甲总科)+ 象甲总科)的姐妹关系。我们相信,黄斑芫菁的完整线粒体基因组将有助于进一步研究芫菁科甚至扁甲总科分类和系统发育的分子基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4e46/7164779/f1af75d6b0f4/ieaa021f0001.jpg

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