• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

结合SchNet和SHARC:用于激发态动力学的SchNarc机器学习方法。

Combining SchNet and SHARC: The SchNarc Machine Learning Approach for Excited-State Dynamics.

作者信息

Westermayr Julia, Gastegger Michael, Marquetand Philipp

机构信息

Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Str. 17, 1090 Vienna, Austria.

Machine Learning Group, Technical University of Berlin, 10587 Berlin, Germany.

出版信息

J Phys Chem Lett. 2020 May 21;11(10):3828-3834. doi: 10.1021/acs.jpclett.0c00527. Epub 2020 May 1.

DOI:10.1021/acs.jpclett.0c00527
PMID:32311258
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7246974/
Abstract

In recent years, deep learning has become a part of our everyday life and is revolutionizing quantum chemistry as well. In this work, we show how deep learning can be used to advance the research field of photochemistry by learning all important properties-multiple energies, forces, and different couplings-for photodynamics simulations. We simplify such simulations substantially by (i) a phase-free training skipping costly preprocessing of raw quantum chemistry data; (ii) rotationally covariant nonadiabatic couplings, which can either be trained or (iii) alternatively be approximated from only ML potentials, their gradients, and Hessians; and (iv) incorporating spin-orbit couplings. As the deep-learning method, we employ SchNet with its automatically determined representation of molecular structures and extend it for multiple electronic states. In combination with the molecular dynamics program SHARC, our approach termed SchNarc is tested on two polyatomic molecules and paves the way toward efficient photodynamics simulations of complex systems.

摘要

近年来,深度学习已成为我们日常生活的一部分,同时也正在给量子化学带来变革。在这项工作中,我们展示了如何通过学习光动力学模拟的所有重要属性(多种能量、力和不同耦合),利用深度学习推动光化学研究领域的发展。我们通过以下方式大幅简化此类模拟:(i)无相位训练,跳过原始量子化学数据的昂贵预处理;(ii)旋转协变非绝热耦合,其既可以进行训练,或者(iii)也可以仅从机器学习势、其梯度和海森矩阵进行近似;以及(iv)纳入自旋轨道耦合。作为深度学习方法,我们采用具有自动确定分子结构表示的SchNet,并将其扩展到多个电子态。结合分子动力学程序SHARC,我们称为SchNarc的方法在两个多原子分子上进行了测试,为复杂系统的高效光动力学模拟铺平了道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d9a/7246974/cd9efdc73ccb/jz0c00527_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d9a/7246974/20330a63a3c6/jz0c00527_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d9a/7246974/13a201dd9dee/jz0c00527_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d9a/7246974/cd9efdc73ccb/jz0c00527_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d9a/7246974/20330a63a3c6/jz0c00527_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d9a/7246974/13a201dd9dee/jz0c00527_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d9a/7246974/cd9efdc73ccb/jz0c00527_0003.jpg

相似文献

1
Combining SchNet and SHARC: The SchNarc Machine Learning Approach for Excited-State Dynamics.结合SchNet和SHARC:用于激发态动力学的SchNarc机器学习方法。
J Phys Chem Lett. 2020 May 21;11(10):3828-3834. doi: 10.1021/acs.jpclett.0c00527. Epub 2020 May 1.
2
Nonadiabatic dynamics: The SHARC approach.非绝热动力学:SHARC方法。
Wiley Interdiscip Rev Comput Mol Sci. 2018 Nov-Dec;8(6):e1370. doi: 10.1002/wcms.1370. Epub 2018 May 9.
3
A Look Inside the Black Box of Machine Learning Photodynamics Simulations.机器学习光动力学模拟的黑箱内部观察。
Acc Chem Res. 2022 Jul 19;55(14):1972-1984. doi: 10.1021/acs.accounts.2c00288. Epub 2022 Jul 7.
4
Deep learning for UV absorption spectra with SchNarc: First steps toward transferability in chemical compound space.深度学习在 SchNarc 下的紫外吸收光谱:化合物空间中转移能力的初探。
J Chem Phys. 2020 Oct 21;153(15):154112. doi: 10.1063/5.0021915.
5
QM/MM Nonadiabatic Dynamics: the SHARC/COBRAMM Approach.QM/MM 非绝热动力学:SHARC/COBRAMM 方法。
J Chem Theory Comput. 2021 Aug 10;17(8):4639-4647. doi: 10.1021/acs.jctc.1c00318. Epub 2021 Jun 11.
6
Predicting Molecular Photochemistry Using Machine-Learning-Enhanced Quantum Dynamics Simulations.使用机器学习增强的量子动力学模拟预测分子光化学。
Acc Chem Res. 2022 Jan 18;55(2):209-220. doi: 10.1021/acs.accounts.1c00665. Epub 2022 Jan 4.
7
SchNet - A deep learning architecture for molecules and materials.SchNet - 一种用于分子和材料的深度学习架构。
J Chem Phys. 2018 Jun 28;148(24):241722. doi: 10.1063/1.5019779.
8
Excited electronic states and nonadiabatic effects in contemporary chemical dynamics.当代化学动力学中的激发电子态与非绝热效应
Acc Chem Res. 2009 Aug 18;42(8):1004-15. doi: 10.1021/ar800186s.
9
SpaiNN: equivariant message passing for excited-state nonadiabatic molecular dynamics.SpaiNN:用于激发态非绝热分子动力学的等变消息传递
Chem Sci. 2024 Sep 2;15(38):15880-90. doi: 10.1039/d4sc04164j.
10
A diabatic representation including both valence nonadiabatic interactions and spin-orbit effects for reaction dynamics.一种用于反应动力学的包含价层非绝热相互作用和自旋轨道效应的非绝热表示。
J Phys Chem A. 2007 Sep 6;111(35):8536-51. doi: 10.1021/jp072590u. Epub 2007 Aug 11.

引用本文的文献

1
Learning radical excited states from sparse data.从稀疏数据中学习自由基激发态。
Chem Sci. 2025 Aug 12. doi: 10.1039/d5sc04276c.
2
Surface Hopping Nested Instances Training Set for Excited-state Learning.用于激发态学习的表面跳跃嵌套实例训练集
Sci Data. 2025 Jul 26;12(1):1300. doi: 10.1038/s41597-025-05443-5.
3
COLUMBUS─An Efficient and General Program Package for Ground and Excited State Computations Including Spin-Orbit Couplings and Dynamics.哥伦布─一个用于基态和激发态计算的高效通用程序包,包括自旋轨道耦合和动力学。

本文引用的文献

1
Molecular Photochemistry: Recent Developments in Theory.分子光化学:理论的最新进展。
Angew Chem Int Ed Engl. 2020 Sep 21;59(39):16832-16846. doi: 10.1002/anie.201916381. Epub 2020 Jun 17.
2
Machine learning enables long time scale molecular photodynamics simulations.机器学习可实现长时间尺度的分子光动力学模拟。
Chem Sci. 2019 Aug 5;10(35):8100-8107. doi: 10.1039/c9sc01742a. eCollection 2019 Sep 21.
3
Extending the Representation of Multistate Coupled Potential Energy Surfaces To Include Properties Operators Using Neural Networks: Application to the 1,2A States of Ammonia.
J Phys Chem A. 2025 Jul 17;129(28):6482-6517. doi: 10.1021/acs.jpca.5c02047. Epub 2025 Jul 8.
4
Charting electronic-state manifolds across molecules with multi-state learning and gap-driven dynamics via efficient and robust active learning.通过高效且稳健的主动学习,利用多状态学习和能隙驱动动力学绘制跨分子的电子态流形。
NPJ Comput Mater. 2025;11(1):132. doi: 10.1038/s41524-025-01636-z. Epub 2025 May 13.
5
Size-Transferable Prediction of Excited State Properties for Molecular Assemblies with a Machine Learning Exciton Model.基于机器学习激子模型的分子组装体激发态性质的尺寸可转移预测
J Phys Chem Lett. 2025 Mar 13;16(10):2541-2552. doi: 10.1021/acs.jpclett.4c03548. Epub 2025 Mar 3.
6
Advancing nonadiabatic molecular dynamics simulations in solids with E(3) equivariant deep neural hamiltonians.利用具有E(3)等变深度神经哈密顿量推进固体中的非绝热分子动力学模拟。
Nat Commun. 2025 Feb 27;16(1):2033. doi: 10.1038/s41467-025-57328-1.
7
Interpolating numerically exact many-body wave functions for accelerated molecular dynamics.通过数值插值得到精确的多体波函数以加速分子动力学模拟。
Nat Commun. 2025 Feb 26;16(1):2005. doi: 10.1038/s41467-025-57134-9.
8
Transformer-generated atomic embeddings to enhance prediction accuracy of crystal properties with machine learning.基于Transformer生成的原子嵌入,通过机器学习提高晶体性质的预测精度。
Nat Commun. 2025 Jan 31;16(1):1210. doi: 10.1038/s41467-025-56481-x.
9
SpaiNN: equivariant message passing for excited-state nonadiabatic molecular dynamics.SpaiNN:用于激发态非绝热分子动力学的等变消息传递
Chem Sci. 2024 Sep 2;15(38):15880-90. doi: 10.1039/d4sc04164j.
10
Explainable chemical artificial intelligence from accurate machine learning of real-space chemical descriptors.基于实空间化学描述符的精确机器学习实现可解释的化学人工智能。
Nat Commun. 2024 May 21;15(1):4345. doi: 10.1038/s41467-024-48567-9.
利用神经网络扩展多态耦合势能表面的表示以包含物性算子:在氨的 1,2A 态中的应用。
J Chem Theory Comput. 2020 Jan 14;16(1):302-313. doi: 10.1021/acs.jctc.9b00898. Epub 2019 Dec 5.
4
Unifying machine learning and quantum chemistry with a deep neural network for molecular wavefunctions.用深度神经网络统一机器学习和量子化学以获得分子波函数。
Nat Commun. 2019 Nov 15;10(1):5024. doi: 10.1038/s41467-019-12875-2.
5
Machine Learning Interatomic Potentials as Emerging Tools for Materials Science.机器学习原子间势:材料科学的新兴工具。
Adv Mater. 2019 Nov;31(46):e1902765. doi: 10.1002/adma.201902765. Epub 2019 Sep 5.
6
Accurate and transferable multitask prediction of chemical properties with an atoms-in-molecules neural network.利用分子中原子神经网络对化学性质进行准确且可迁移的多任务预测。
Sci Adv. 2019 Aug 9;5(8):eaav6490. doi: 10.1126/sciadv.aav6490. eCollection 2019 Aug.
7
Neural network based quasi-diabatic Hamiltonians with symmetry adaptation and a correct description of conical intersections.具有对称性适配和锥形交叉正确描述的基于神经网络的准绝热哈密顿量。
J Chem Phys. 2019 Jun 7;150(21):214101. doi: 10.1063/1.5099106.
8
Bayesian machine learning for quantum molecular dynamics.用于量子分子动力学的贝叶斯机器学习
Phys Chem Chem Phys. 2019 Jun 26;21(25):13392-13410. doi: 10.1039/c9cp01883b.
9
A Quasi-Diabatic Representation of the 1,2A States of Methylamine.甲胺1,2A态的一种准绝热表示
J Phys Chem A. 2019 Jun 27;123(25):5231-5241. doi: 10.1021/acs.jpca.9b03801. Epub 2019 Jun 15.
10
The Influence of the Electronic Structure Method on Intersystem Crossing Dynamics. The Case of Thioformaldehyde.电子结构方法对系间窜越动力学的影响。以硫甲醛为例。
J Chem Theory Comput. 2019 Jun 11;15(6):3470-3480. doi: 10.1021/acs.jctc.9b00282. Epub 2019 May 14.