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野生环境下的基因组释放-重捕获实验揭示了刺鱼的代内多基因选择。

Genomic release-recapture experiment in the wild reveals within-generation polygenic selection in stickleback fish.

机构信息

Department of Environmental Sciences, Zoology, University of Basel, Vesalgasse 1, 4051, Basel, Switzerland.

Institute of Ecology and Evolution, University of Bern, Bern, Switzerland.

出版信息

Nat Commun. 2020 Apr 21;11(1):1928. doi: 10.1038/s41467-020-15657-3.

Abstract

How rapidly natural selection sorts genome-wide standing genetic variation during adaptation remains largely unstudied experimentally. Here, we present a genomic release-recapture experiment using paired threespine stickleback fish populations adapted to selectively different lake and stream habitats. First, we use pooled whole-genome sequence data from the original populations to identify hundreds of candidate genome regions likely under divergent selection between these habitats. Next, we generate F2 hybrids from the same lake-stream population pair in the laboratory and release thousands of juveniles into a natural stream habitat. Comparing the individuals surviving one year of stream selection to a reference sample of F2 hybrids allows us to detect frequency shifts across the candidate regions toward the genetic variants typical of the stream population-an experimental outcome consistent with polygenic directional selection. Our study reveals that adaptation in nature can be detected as a genome-wide signal over just a single generation.

摘要

自然选择在适应过程中对全基因组的遗传变异进行分选的速度在很大程度上仍未得到实验研究。在这里,我们展示了一项使用配对的三刺鱼种群进行的基因组释放-捕获实验,这些种群适应于选择性地不同的湖泊和溪流生境。首先,我们使用原始种群的 pooled whole-genome sequence data 来鉴定数百个可能在这些栖息地之间存在分歧选择的候选基因组区域。接下来,我们从同一湖泊-溪流种群对在实验室中产生 F2 杂种,并将数千条幼鱼释放到自然溪流栖息地中。将在溪流选择中存活一年的个体与 F2 杂种的参考样本进行比较,使我们能够检测到候选区域的频率向溪流种群典型的遗传变异的偏移,这一实验结果与多基因定向选择一致。我们的研究表明,自然适应可以在仅仅一代中就被检测为全基因组信号。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0f1c/7174299/e7188a3a3f43/41467_2020_15657_Fig1_HTML.jpg

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