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人类寄生线虫的性染色体进化。

Sex chromosome evolution in parasitic nematodes of humans.

机构信息

Division of Protein Expression & Modification, New England Biolabs, Ipswich, MA, 01938, USA.

Department of Biology, Center for Genomics and Systems Biology, New York University, New York, NY, 10003, USA.

出版信息

Nat Commun. 2020 Apr 23;11(1):1964. doi: 10.1038/s41467-020-15654-6.

DOI:10.1038/s41467-020-15654-6
PMID:32327641
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7181701/
Abstract

Sex determination mechanisms often differ even between related species yet the evolution of sex chromosomes remains poorly understood in all but a few model organisms. Some nematodes such as Caenorhabditis elegans have an XO sex determination system while others, such as the filarial parasite Brugia malayi, have an XY mechanism. We present a complete B. malayi genome assembly and define Nigon elements shared with C. elegans, which we then map to the genomes of other filarial species and more distantly related nematodes. We find a remarkable plasticity in sex chromosome evolution with several distinct cases of neo-X and neo-Y formation, X-added regions, and conversion of autosomes to sex chromosomes from which we propose a model of chromosome evolution across different nematode clades. The phylum Nematoda offers a new and innovative system for gaining a deeper understanding of sex chromosome evolution.

摘要

性别决定机制即使在相关物种之间也常常不同,但除了少数几个模式生物外,性染色体的进化仍知之甚少。一些线虫,如秀丽隐杆线虫,具有 XO 性别决定系统,而其他线虫,如丝虫寄生虫布鲁氏菌,具有 XY 机制。我们展示了完整的布鲁氏菌基因组组装,并定义了与秀丽隐杆线虫共享的 Nigon 元件,然后将其映射到其他丝虫物种和更远缘的线虫基因组上。我们发现性染色体进化具有惊人的可塑性,存在几种新的 X 和 Y 形成、X 附加区域以及常染色体向性染色体的转化的明显案例,从中我们提出了一个跨不同线虫类群的染色体进化模型。线虫门为更深入地了解性染色体进化提供了一个新的、创新的系统。

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本文引用的文献

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Chromosome-Wide Evolution and Sex Determination in the Three-Sexed Nematode .三性别线虫的全染色体进化与性别决定
G3 (Bethesda). 2019 Apr 9;9(4):1211-1230. doi: 10.1534/g3.119.0011.
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Single-Molecule Sequencing Reveals the Chromosome-Scale Genomic Architecture of the Nematode Model Organism Pristionchus pacificus.单分子测序揭示了线虫模式生物秀丽隐杆线虫的染色体级基因组结构。
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Sex chromosome evolution: historical insights and future perspectives.性染色体进化:历史见解与未来展望。
利用广泛的基因分型方法研究两个物种(指名亚种)之间线粒体基因组的杂交和渐渗:进化和生态意义。
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Sex and neo-sex chromosome evolution in beetles.甲虫的性别与新性染色体进化
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Rapid chromosome evolution and acquisition of thermosensitive stochastic sex determination in nematode androdioecious hermaphrodites.线虫雌雄同体兼行孤雌生殖类中快速的染色体进化和热敏随机性别决定的获得。
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Dual RNA-seq in filarial nematodes and endosymbionts using RNase H based ribosomal RNA depletion.使用基于核糖核酸酶H的核糖体RNA去除技术对线虫和内共生体进行双重RNA测序。
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7
SMC-mediated dosage compensation in evolved in the presence of an ancestral nematode mechanism.SMC介导的剂量补偿是在一种原始线虫机制存在的情况下进化而来的。
bioRxiv. 2024 May 24:2024.05.21.595224. doi: 10.1101/2024.05.21.595224.
8
Comparative Genomics of Sex, Chromosomes, and Sex Chromosomes in Caenorhabditis elegans and Other Nematodes.性、染色体和性染色体的比较基因组学在秀丽隐杆线虫和其他线虫中的研究。
Methods Mol Biol. 2024;2802:455-472. doi: 10.1007/978-1-0716-3838-5_15.
9
Chromosome fusion and programmed DNA elimination shape karyotypes of nematodes.染色体融合和程序性 DNA 缺失塑造线虫的核型。
Curr Biol. 2024 May 20;34(10):2147-2161.e5. doi: 10.1016/j.cub.2024.04.022. Epub 2024 Apr 29.
10
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PLoS Genet. 2024 Jan 16;20(1):e1011116. doi: 10.1371/journal.pgen.1011116. eCollection 2024 Jan.
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Defining Brugia malayi and Wolbachia symbiosis by stage-specific dual RNA-seq.通过阶段特异性双RNA测序定义马来布鲁线虫与沃尔巴克氏体共生关系。
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WormBase ParaSite - a comprehensive resource for helminth genomics.WormBase ParaSite——一个全面的蠕虫基因组学资源库。
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