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新种黄海海杆菌,一种从中国东海潮间带沉积物中分离出的新型海洋细菌。

Maribacter luteocoastalis sp. nov., a novel marine bacterium isolated from the tidal flat sediments of the East China Sea.

作者信息

Cao Xingyu, Bao Tianqiang, Wang Jiaxin, Yu Xi, Fang Jiasong

机构信息

Shanghai Engineering Research Center of Hadal Science and Technology, College of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai, 201306, China.

Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237, China.

出版信息

Antonie Van Leeuwenhoek. 2025 Aug 13;118(9):129. doi: 10.1007/s10482-025-02139-z.

Abstract

A Gram-stain-negative, halophilic, rod-shaped, aerobic bacterial strain, designated as CXY002, was isolated from intertidal seawater of the East China Sea. Strain CXY002 exhibited growth at 4-33 °C (optimum 28 °C), pH 5.5-10 (optimum pH 6-7), and 2-10% (w/v) NaCl (optimum 6%). Based on 16S rRNA gene sequence phylogenetic analysis, strain CXY002 exhibited sequence similarities of 98.20% with Maribacter orientalis DSM 16471, 98.12% with M. spongiicola W15M10, 98.00% with M. stanieri DSM 19891, 98.00% with M. cobaltidurans B1, and 97.72% with M. aquivivus DSM 16478. Phylogenomic reconstruction confirmed its affiliation within the genus Maribacter. Digital DNA-DNA hybridization (dDDH) and average nucleotide identity (ANI) values between CXY002 and closely related species ranged from 15.20 to 16.30% and 71.90 to 72.46%, respectively, both below the recommended thresholds for species demarcation (70% for dDDH and 95-96% for ANI). The genomic DNA G+C content was determined to be 36.5 mol%. The predominant respiratory quinone was menaquinone-6 (MK-6), while the major fatty acids comprised iso-C (26.7%), 3-OH iso-C (19.9%), and iso-C (16.6%). Polar lipids included phosphatidylethanolamine, two unidentified aminolipids, and four unidentified lipids. Genomic annotation identified complete carotenoid biosynthesis pathways (crt-B, crt-I, crt-Z), supporting which may contribute to oxidative stress resistance via β-carotene and zeaxanthin biosynthesis. Based on polyphasic taxonomic evidence encompassing phenotypic, chemotaxonomic, and genomic characteristics, strain CXY002 represents a novel species within the genus Maribacter, for which the name Maribacter luteocoastalis sp. nov. is proposed. The type strain is CXY002 (= MCCC 1K09937 = KCTC 102438).

摘要

从中国东海潮间带海水中分离出一株革兰氏染色阴性、嗜盐、杆状、需氧的细菌菌株,命名为CXY002。CXY002菌株在4-33°C(最适温度28°C)、pH 5.5-10(最适pH 6-7)和2-10%(w/v)NaCl(最适6%)条件下生长。基于16S rRNA基因序列系统发育分析,CXY002菌株与东方海杆菌DSM 16471的序列相似性为98.20%,与海绵海杆菌W15M10的序列相似性为98.12%,与斯坦尼尔海杆菌DSM 19891的序列相似性为98.00%,与钴还原海杆菌B1的序列相似性为98.00%,与食海水海杆菌DSM 16478的序列相似性为97.72%。系统发育基因组重建证实其属于海杆菌属。CXY002与近缘物种之间的数字DNA-DNA杂交(dDDH)值和平均核苷酸同一性(ANI)值分别为15.20%至16.30%和71.90%至72.46%,均低于物种划分的推荐阈值(dDDH为70%,ANI为95-96%)。基因组DNA的G+C含量测定为36.5 mol%。主要呼吸醌为甲基萘醌-6(MK-6),而主要脂肪酸包括异-C(26.7%)、3-羟基异-C(19.9%)和异-C(16.6%)。极性脂质包括磷脂酰乙醇胺、两种未鉴定的氨基脂质和四种未鉴定的脂质。基因组注释确定了完整的类胡萝卜素生物合成途径(crt-B、crt-I、crt-Z),支持其可能通过β-胡萝卜素和玉米黄质生物合成有助于抵抗氧化应激。基于包括表型、化学分类和基因组特征的多相分类学证据,CXY002菌株代表海杆菌属内的一个新物种,为此提出名为黄色海岸海杆菌(Maribacter luteocoastalis sp. nov.)。模式菌株为CXY002(=MCCC 1K09937=KCTC 102438)。

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