Guo He-Bao, He Shan-Wen, Wang Xing, Thin Kyu-Kyu, Wei Hai-Lei, Zhang Xiao-Xia
Key Laboratory of Microbial Resources Collection and Preservation, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China;
Microorganisms. 2020 May 10;8(5):702. doi: 10.3390/microorganisms8050702.
A novel Gram-stain-positive, rod-shaped, endospore-forming bacterium, which we designated as strain 03113, was isolated from greenhouse soil in Beijing, China. Phylogenetic analysis based on 16S rRNA gene sequences showed strain 03113 is in the genus and had the highest similarity to CCTCC AB 2014277 (98.14%). The strain grew at 4 °C-50 °C (optimum 37 °C), with 0-10% () NaCl (optimum 5%), and in the range of pH 3.0-12.0 (optimum pH 8.0). Menaquinone was identified as MK-7, and the major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, and phosphatidylethanolamine. The main major cellular fatty acids detected were anteiso-C (51.35%) and iso-C (11.06%), which are the predominant cellular fatty acids found in all recognized members of the genus . The 16S rRNA gene sequence and core-genome analysis, the average nucleotide identity (ANI), and in silico DNA-DNA hybridization (DDH) value between strain 03113 and the most closely related species were 70.5% and 22.6%, respectively, which supported our conclusion that 03113 represented a novel species in the genus . We demonstrated that type strain 03113 (=ACCC 03113=JCM 33017) was a novel species in the genus , and the name sp. nov. was proposed. Strain 03113 secreted auxin IAA and carried the nitrogenase iron protein () gene, which indicated that strain 03113 has the potential to fix nitrogen and promote plant growth. sp. nov. 03113 is a potential candidate for the biofertilizers of organic agriculture areas.
从中国北京温室土壤中分离出一种新型革兰氏阳性、杆状、产芽孢细菌,我们将其命名为03113菌株。基于16S rRNA基因序列的系统发育分析表明,03113菌株属于该属,与CCTCC AB 2014277的相似性最高(98.14%)。该菌株在4℃至50℃(最适温度37℃)、0至10%(质量分数)NaCl(最适浓度5%)以及pH 3.0至12.0(最适pH 8.0)范围内生长。鉴定出的甲基萘醌为MK-7,主要极性脂为双磷脂酰甘油、磷脂酰甘油和磷脂酰乙醇胺。检测到的主要细胞脂肪酸为anteiso-C(51.35%)和iso-C(11.06%),这是该属所有已知成员中主要的细胞脂肪酸。03113菌株与最密切相关物种之间的16S rRNA基因序列和核心基因组分析、平均核苷酸同一性(ANI)以及电子DNA-DNA杂交(DDH)值分别为70.5%和22.6%,这支持了我们关于03113代表该属一个新物种的结论。我们证明模式菌株03113(=ACCC 03113=JCM 33017)是该属的一个新物种,并提出了新物种名称sp. nov.。菌株03113分泌生长素IAA并携带固氮酶铁蛋白()基因,这表明菌株03113具有固氮和促进植物生长的潜力。sp. nov. 03113是有机农业地区生物肥料的潜在候选菌株。