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杭州弗拉特氏菌新种。从中国杭州毛竹林土壤中分离得到。

Frateuria hangzhouensis sp. nov. Isolated from Soil of Moso Bamboo Forest in Hangzhou, China.

作者信息

Yang Fu, Yue Jinjun, Wang Qin, Zha Weiwei, Zhou Yanxu, Yuan Jinling, Li Lubin, Sun Qiwu, Liu Lei

机构信息

State Key Laboratory of Efficient Production of Forest Resources, Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, Chinese Academy of Forestry, Research Institute of Forestry, Beijing, 100091, China.

State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, Key Laboratory of Microbial Resources Collection and Preservation, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.

出版信息

Curr Microbiol. 2025 Apr 28;82(6):263. doi: 10.1007/s00284-025-04232-y.

Abstract

A novel bacterium, designated STR12, was isolated from the soil of a moso bamboo (Phyllostachys edulis) forest in Hangzhou, China. The strain was a Gram-stain-negative, rod-shaped, motile bacterium; the colonies of which were yellow, round, flat, sticky, and non-moist with a smooth margin after cultivation for 3 days at 28 °C. The strain grew at temperatures between 15 and 37 °C (optimum, 28 °C), pH values from 4.0 to 8.0 (optimum, pH 7.0), and salinities ranging from 0 to 5% (w/v) NaCl (optimum, 1%). Phylogenetic analyses based on the 16S rRNA gene sequence revealed that the strain was grouped within a cluster of the genus Frateuria, showing the highest similarity with Frateuria flava MAH-13 (97.7%). The genome of strain STR12 was 3.74 Mb in length with a G+C content of 67.9%. Genome comparisons of strain STR12 with other species within the genus Frateuria revealed that the range of average nucleotide identity, DNA-DNA hybridization, and average amino acid identity values were 73.9-85.9%, 20.8-30.7%, and 62.7-86.7%, respectively, all of those were below the respective prokaryotic species delineation thresholds. The predominant quinone in strain STR12 was ubiquinone-8 and the major fatty acids were iso-C, iso-C, iso-C, and Summed Feature 9. Polar lipids included diphosphatidylglycerol, phosphatidylethanolamine, two unidentified aminophospholipids, and one unidentified phosphoglycolipid. On basis of the finding of phylogenetic, physiological, and chemotaxonomic analyses, we proposed the name Frateuria hangzhouensis sp. nov. for the novel species in the genus Frateuria, of which the type strain was strain STR12 (= ACCC 61897 = GDMCC 1.2964 = JCM 35226).

摘要

从中国杭州毛竹林土壤中分离出一种新型细菌,命名为STR12。该菌株为革兰氏阴性、杆状、运动细菌;在28℃培养3天后,其菌落呈黄色、圆形、扁平、粘性、不湿润,边缘光滑。该菌株在15至37℃(最适温度为28℃)、pH值4.0至8.0(最适pH值为7.0)以及盐度0至5%(w/v)NaCl(最适盐度为1%)的条件下生长。基于16S rRNA基因序列的系统发育分析表明,该菌株属于弗拉特氏菌属的一个聚类,与黄弗拉特氏菌MAH-13的相似性最高(97.7%)。菌株STR12的基因组长度为3.74 Mb,G+C含量为67.9%。将菌株STR12与弗拉特氏菌属内其他物种的基因组进行比较,结果表明平均核苷酸同一性、DNA-DNA杂交和平均氨基酸同一性值的范围分别为73.9-85.9%、20.8-30.7%和62.7-86.7%,均低于各自的原核生物物种划分阈值。菌株STR12中的主要醌类为泛醌-8,主要脂肪酸为异-C、异-C、异-C和特征性总和9。极性脂质包括双磷脂酰甘油、磷脂酰乙醇胺、两种未鉴定的氨基磷脂和一种未鉴定的磷酸糖脂。基于系统发育、生理和化学分类分析结果,我们提议将弗拉特氏菌属中的这个新物种命名为杭州弗拉特氏菌(Frateuria hangzhouensis sp. nov.),其模式菌株为菌株STR12(=ACCC 61897 = GDMCC 1.2964 = JCM 35226)。

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