快速生长微藻的阶段性二倍体基因组序列
Phased Diploid Genome Sequence for the Fast-Growing Microalga .
作者信息
Becker Scott A, Spreafico Roberto, Kit Jennie L, Brown Rob, Likhogrud Maria, Fang Wei, Posewitz Matthew C, Weissman Joseph C, Radakovits Randor
机构信息
Synthetic Genomics, Inc., La Jolla, California, USA.
ExxonMobil Research and Engineering Company, Annandale, New Jersey, USA.
出版信息
Microbiol Resour Announc. 2020 May 14;9(20):e00087-20. doi: 10.1128/MRA.00087-20.
Abstract
is a fast-growing marine microalga with high biomass productivity. Here, we report the use of PacBio sequencing to assemble the phased diploid genome of .
摘要
是一种具有高生物量生产力的快速生长的海洋微藻。在此，我们报告了使用PacBio测序来组装的阶段性二倍体基因组。
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本文引用的文献
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2
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Mol Biol Evol. 2018 Nov 1;35(11):2702-2711. doi: 10.1093/molbev/msy167.
3
Genome Analyses of the Microalga Picochlorum Provide Insights into the Evolution of Thermotolerance in the Green Lineage.
Genome Biol Evol. 2018 Sep 1;10(9):2347-2365. doi: 10.1093/gbe/evy167.
4
MUMmer4: A fast and versatile genome alignment system.
PLoS Comput Biol. 2018 Jan 26;14(1):e1005944. doi: 10.1371/journal.pcbi.1005944. eCollection 2018 Jan.
5
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6
GenomeScope: fast reference-free genome profiling from short reads.
Bioinformatics. 2017 Jul 15;33(14):2202-2204. doi: 10.1093/bioinformatics/btx153.
7
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Nat Genet. 2017 Apr;49(4):643-650. doi: 10.1038/ng.3802. Epub 2017 Mar 6.
8
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