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重新审视芽殖酵母中转录共剪接的机会之窗。

Revisiting the window of opportunity for cotranscriptional splicing in budding yeast.

机构信息

Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, United Kingdom.

出版信息

RNA. 2020 Sep;26(9):1081-1085. doi: 10.1261/rna.075895.120. Epub 2020 May 21.

DOI:10.1261/rna.075895.120
PMID:32439718
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7430680/
Abstract

We reported previously that, in budding yeast, transcription rate affects both the efficiency and fidelity of pre-mRNA splicing, especially of ribosomal protein transcripts. Here, we report that the majority of ribosomal protein transcripts with non-consensus 5' splice sites are spliced less efficiently when transcription is faster, and more efficiently with slower transcription. These results support the "window of opportunity" model, and we suggest a possible mechanism to explain these findings.

摘要

我们之前曾报道过,在出芽酵母中,转录速率会影响前体 mRNA 剪接的效率和保真度,尤其是核糖体蛋白转录本。在这里,我们报告说,当转录速度较快时,大多数具有非共识 5'剪接位点的核糖体蛋白转录本的剪接效率较低,而当转录速度较慢时,剪接效率较高。这些结果支持“机会之窗”模型,并且我们提出了一种可能的机制来解释这些发现。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b715/7430680/83c9706bea9c/1081f02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b715/7430680/f7d689f04ff8/1081f01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b715/7430680/83c9706bea9c/1081f02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b715/7430680/f7d689f04ff8/1081f01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b715/7430680/83c9706bea9c/1081f02.jpg

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2
Prespliceosome structure provides insights into spliceosome assembly and regulation.前剪接体结构为剪接体的组装和调控提供了线索。
Nature. 2018 Jul;559(7714):419-422. doi: 10.1038/s41586-018-0323-8. Epub 2018 Jul 11.
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Transcription rate strongly affects splicing fidelity and cotranscriptionality in budding yeast.转录率强烈影响芽殖酵母的剪接保真度和共转录性。
J Mol Biol. 2025 Jan 1;437(1):168814. doi: 10.1016/j.jmb.2024.168814. Epub 2024 Oct 5.
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Truncating the spliceosomal 'rope protein' Prp45 results in Htz1 dependent phenotypes.截短剪接体“绳状蛋白”Prp45 导致 Htz1 依赖性表型。
RNA Biol. 2024 Jan;21(1):1-17. doi: 10.1080/15476286.2024.2348896. Epub 2024 May 6.
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Alternative splicing is coupled to gene expression in a subset of variably expressed genes.可变剪接与部分可变表达基因中的基因表达相关联。
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Co-Transcriptional RNA Processing in Plants: Exploring from the Perspective of Polyadenylation.植物的共转录 RNA 加工:从多聚腺苷酸化角度探索
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