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核内环境中的前体信使核糖核酸剪接

Pre-mRNA Splicing in the Nuclear Landscape.

作者信息

Carrocci Tucker J, Neugebauer Karla M

机构信息

Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520, USA.

出版信息

Cold Spring Harb Symp Quant Biol. 2019;84:11-20. doi: 10.1101/sqb.2019.84.040402. Epub 2020 Jun 3.

DOI:10.1101/sqb.2019.84.040402
PMID:32493763
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7384967/
Abstract

Eukaryotic gene expression requires the cumulative activity of multiple molecular machines to synthesize and process newly transcribed pre-messenger RNA. Introns, the noncoding regions in pre-mRNA, must be removed by the spliceosome, which assembles on the pre-mRNA as it is transcribed by RNA polymerase II (Pol II). The assembly and activity of the spliceosome can be modulated by features including the speed of transcription elongation, chromatin, post-translational modifications of Pol II and histone tails, and other RNA processing events like 5'-end capping. Here, we review recent work that has revealed cooperation and coordination among co-transcriptional processing events and speculate on new avenues of research. We anticipate new mechanistic insights capable of unraveling the relative contribution of coupled processing to gene expression.

摘要

真核基因表达需要多种分子机器协同作用,以合成和加工新转录的前体信使RNA。前体mRNA中的非编码区域——内含子,必须由剪接体去除,剪接体在RNA聚合酶II(Pol II)转录前体mRNA时组装在前体mRNA上。剪接体的组装和活性可受到多种因素的调节,包括转录延伸速度、染色质、Pol II和组蛋白尾巴的翻译后修饰,以及其他RNA加工事件,如5'端加帽。在这里,我们综述了最近的研究工作,这些工作揭示了共转录加工事件之间的合作与协调,并对新的研究途径进行了推测。我们期待能有新的机制性见解,以阐明偶联加工对基因表达的相对贡献。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a2f2/7384967/e62c705ce171/nihms-1604922-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a2f2/7384967/a0a731bb632f/nihms-1604922-f0001.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a2f2/7384967/75d46abe4cc3/nihms-1604922-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a2f2/7384967/e62c705ce171/nihms-1604922-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a2f2/7384967/a0a731bb632f/nihms-1604922-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a2f2/7384967/aa0816ff6c48/nihms-1604922-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a2f2/7384967/75d46abe4cc3/nihms-1604922-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a2f2/7384967/e62c705ce171/nihms-1604922-f0004.jpg

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Splicing Kinetics and Coordination Revealed by Direct Nascent RNA Sequencing through Nanopores.通过纳米孔直接新生 RNA 测序揭示的剪接动力学和协调。
Mol Cell. 2020 Mar 5;77(5):985-998.e8. doi: 10.1016/j.molcel.2019.11.017. Epub 2019 Dec 12.
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RNA Splicing by the Spliceosome.剪接体的 RNA 剪接。
Annu Rev Biochem. 2020 Jun 20;89:359-388. doi: 10.1146/annurev-biochem-091719-064225. Epub 2019 Dec 3.
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Exon-Mediated Activation of Transcription Starts.外显子介导的转录起始激活。
基于转录因子结合位点预测启动子中的剪接模式。
BMC Genomics. 2024 Sep 3;25(Suppl 3):830. doi: 10.1186/s12864-024-10667-7.
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Splicing regulation through biomolecular condensates and membraneless organelles.通过生物分子凝聚物和无膜细胞器进行剪接调控。
Nat Rev Mol Cell Biol. 2024 Sep;25(9):683-700. doi: 10.1038/s41580-024-00739-7. Epub 2024 May 21.
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Truncating the spliceosomal 'rope protein' Prp45 results in Htz1 dependent phenotypes.截短剪接体“绳状蛋白”Prp45 导致 Htz1 依赖性表型。
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Transcription elongation defects link oncogenic SF3B1 mutations to targetable alterations in chromatin landscape.转录延伸缺陷将致癌性 SF3B1 突变与染色质景观中可靶向的改变联系起来。
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U2AF1 in various neoplastic diseases and relevant targeted therapies for malignant cancers with complex mutations (Review).U2AF1 在各种肿瘤性疾病及相关复杂突变恶性肿瘤的靶向治疗中的作用(综述)。
Oncol Rep. 2024 Jan;51(1). doi: 10.3892/or.2023.8664. Epub 2023 Nov 17.
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