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利用数据挖掘技术鉴定转移性皮肤癌的预后基因生物标志物

Identification of prognostic gene biomarkers for metastatic skin cancer using data mining.

作者信息

Liu Gang, Li Chen, Zhen Haiyan, Zhang Zhigang, Sha Yongzhong

机构信息

School of Information Science and Engineering, Lanzhou University, Lanzhou, Gansu 730000, P.R. China.

The First Hospital of Lanzhou University, Lanzhou University, Lanzhou, Gansu 730000, P.R. China.

出版信息

Biomed Rep. 2020 Jul;13(1):22-30. doi: 10.3892/br.2020.1307. Epub 2020 May 18.

Abstract

Skin cancer is a common malignant tumor in China and throughout the world, and the rate of recurrence is considerably high, thus endangering the quality of life and health of patients, and increasing the economic burden and pressure to the families of those afflicted. Due to the limitations of traditional drug treatments, it is difficult to achieve the desired therapeutic effect of complete removal. However, targeted gene therapy may be a novel means of treating skin cancer, as the targeted nature of treatment may improve therapeutic outcomes. However, targeted gene therapy requires physicians to select the appropriate gene, which means suitable genetic biomarkers must be identified from complex genetic data. In the present study, the least absolute shrinkage and selection operator regression analysis method was used with 10-fold cross verification to reduce the dimensions of gene data in patients with skin cancer, and subsequently, 20 gene biomarkers were screened. A prognostic model was constructed using these 20 gene biomarkers, and the validity of the model was assessed using a training set and a verification set, which showed that the model performed well. Finally, gene function analysis of these 20 gene biomarkers was determined. Relevant studies were found to show that the genetic biomarkers identified in this paper may possess value for the follow-up clinical treatment of skin cancer.

摘要

皮肤癌是中国乃至全球常见的恶性肿瘤,复发率相当高,从而危及患者的生活质量和健康,并增加患者家庭的经济负担和压力。由于传统药物治疗的局限性,难以实现完全清除的理想治疗效果。然而,靶向基因治疗可能是一种治疗皮肤癌的新方法,因为治疗的靶向性可能会改善治疗结果。然而,靶向基因治疗要求医生选择合适的基因,这意味着必须从复杂的基因数据中识别出合适的基因生物标志物。在本研究中,使用最小绝对收缩和选择算子回归分析方法并结合10倍交叉验证来降低皮肤癌患者基因数据的维度,随后筛选出20个基因生物标志物。使用这20个基因生物标志物构建了一个预后模型,并使用训练集和验证集评估了该模型的有效性,结果表明该模型表现良好。最后,对这20个基因生物标志物进行了基因功能分析。相关研究发现,本文鉴定的基因生物标志物可能对皮肤癌的后续临床治疗具有价值。

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