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sp. nov.,分离自罗斯海(南极洲)海表微层。

sp. nov., isolated from the sea surface microlayer of the Ross Sea (Antarctica).

机构信息

West Sea Fisheries Research Institute, National Institute of Fisheries Science, Incheon 22383, Republic of Korea.

Department of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2020 Jun;70(6):3832-3838. doi: 10.1099/ijsem.0.004240. Epub 2020 Jun 8.

Abstract

Gram-stain-negative, aerobic and rod-shaped bacterial strains, designated SSM26 and SSM44, were isolated from a sea surface microlayer sample from the Ross Sea, Antarctica. Analysis of the 16S rRNA gene sequences of strains SSM26 and SSM44 revealed a clear affiliation with the genus . Based on the results of phylogenetic analysis, strains SSM26 and SSM44 showed the closest phylogenetic relationship with the species KCTC 22137 with the 16S rRNA gene sequence similarity level of 98.5 %. Strains SSM26 and SSM44 grew optimally at 30 °C, pH 7.0-7.5 and 0.5-10.0 % NaCl (w/v). The major cellular fatty acids were C ω7 (31.3-34.9 %), C (15.5-20.2 %), summed feature 3 (C ω7c/C ω6; 19.5-25.4 %) and C (6.0-9.3 %). The genomic DNA G+C content of each strain was 56.2 mol%. Genomic relatedness analyses based on the average nucleotide identity and the genome-to-genome distance showed that strains SSM26 and SSM44 constituted a single species that was clearly distinguishable from its phylogenetically close relatives. The combined phenotypic, chemotaxonomic, genomic and phylogenetic data also showed that strains SSM26 and SSM44 could be distinguished from validly published members of the genus . Thus, these strains should be classified as representing a novel species in the genus , for which the name sp. nov. is proposed with the type strain SSM26 (=KCCM 43193=JCM 31284=PAMC 28426) and a sister strain SSM44 (=KCCM 43194=JCM 31285=PAMC 28427).

摘要

从南极罗斯海的海洋表面微层样本中分离到两株革兰氏染色阴性、需氧、杆状的细菌菌株,命名为 SSM26 和 SSM44。菌株 SSM26 和 SSM44 的 16S rRNA 基因序列分析表明,它们与属有明确的亲缘关系。基于系统发育分析的结果,菌株 SSM26 和 SSM44 与 KCTC 22137 种的亲缘关系最近,16S rRNA 基因序列相似性水平为 98.5%。菌株 SSM26 和 SSM44 在 30°C、pH 7.0-7.5 和 0.5-10.0%NaCl(w/v)下生长最佳。主要细胞脂肪酸为 C ω7(31.3-34.9%)、C 15.5-20.2%)、总和特征 3(C ω7c/C ω6;19.5-25.4%)和 C 6.0-9.3%)。每个菌株的基因组 DNA G+C 含量为 56.2mol%。基于平均核苷酸同一性和基因组到基因组距离的基因组相关性分析表明,菌株 SSM26 和 SSM44 构成了一个单一的物种,与亲缘关系密切的近缘种明显不同。综合表型、化学分类、基因组和系统发育数据也表明,菌株 SSM26 和 SSM44 可与属内有效发表的成员区分开来。因此,这些菌株应被归类为代表属内的一个新种,建议使用模式菌株 SSM26(=KCCM 43193=JCM 31284=PAMC 28426)和姐妹菌株 SSM44(=KCCM 43194=JCM 31285=PAMC 28427)来命名。

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