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新种,从西南太平洋海面微层分离得到,以及该属的修订描述。

sp. nov., isolated from the sea surface microlayer in the Southwestern Pacific Ocean, and emended description of the genus .

作者信息

Lee Inae, Jang Gwang Il, Cho Yirang, Yoon Soo Jung, Pham Ha My, Nguyen Anh Vu, Lee Yung Mi, Park Hyun, Rhee Tae Siek, Kim Sae Hun, Hwang Chung Yeon

机构信息

Division of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Republic of Korea.

Korea Polar Research Institute, Incheon 21990, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2020 Aug;70(8):4698-4703. doi: 10.1099/ijsem.0.004333.

Abstract

A Gram-stain-negative, non-motile, facultatively anaerobic and rod-shaped bacterial strain, designated PAMC 28131, was isolated from a sea surface microlayer sample in the open water of the Pacific Ocean. Phylogenetic analysis of the 16S rRNA gene sequence of strain PAMC 28131 revealed an affiliation to the genus with the closest species RB16-17 (sequence similarity of 98.2 %). Strain PAMC 28131 was able to grow optimally with 0.5-1.0 % NaCl and at pH 6.5-7.0 and 30 °C. The polar lipids were phosphatidylglycerol, phosphatidylethanolamine, two unidentified phospholipids, an unidentified aminolipid, an unidentified glycolipid and an unidentified lipid. The major cellular fatty acids (>10 %) were C ω6 and/or C ω7 (42.6 %), C ω6 (19.3 %) and C ω6 and/or C ω7 (15.8 %), and the respiratory quinone was Q-10. The genomic DNA G+C content was 65.3 mol%. The phylogenetic, phenotypic and chemotaxonomic data showed that strain PAMC 28131 could be clearly distinguished from RB16-17. Thus, strain PAMC 28131 should be classified as representing a novel species in the genus , for which the name sp. nov. is proposed. The type strain is PAMC 28131 (=KCCM 43127=JCM 30734).

摘要

从太平洋公海的海面微层样本中分离出一株革兰氏染色阴性、无运动性、兼性厌氧的杆状细菌菌株,命名为PAMC 28131。对菌株PAMC 28131的16S rRNA基因序列进行系统发育分析,结果显示它与属内最接近的物种RB16 - 17相关(序列相似性为98.2%)。菌株PAMC 28131在含有0.5 - 1.0%氯化钠、pH值为6.5 - 7.0以及温度为30℃的条件下生长最佳。极性脂类包括磷脂酰甘油、磷脂酰乙醇胺、两种未鉴定的磷脂、一种未鉴定的氨基脂、一种未鉴定的糖脂和一种未鉴定的脂类。主要的细胞脂肪酸(>10%)为C ω6和/或C ω7(42.6%)、C ω6(19.3%)以及C ω6和/或C ω7(15.8%),呼吸醌为Q - 10。基因组DNA的G + C含量为65.3mol%。系统发育、表型和化学分类学数据表明,菌株PAMC 28131可与RB16 - 17明显区分开来。因此,菌株PAMC 28131应被归类为该属中的一个新物种,为此提出新物种名为 sp. nov.。模式菌株为PAMC 28131(=KCCM 43127 =JCM 30734)。

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