Hwang Chung Yeon, Lee Inae, Hwang Yeon Ju, Yoon Soo Jung, Lee Won Sang, Cho Byung Cheol
Division of Polar Life Sciences, Korea Polar Research Institute, Incheon, Republic of Korea.
Microbial Oceanography Laboratory, School of Earth and Environmental Sciences and Research Institute of Oceanography, Seoul National University, Seoul, Republic of Korea.
Int J Syst Evol Microbiol. 2016 Sep;66(9):3377-3382. doi: 10.1099/ijsem.0.001202. Epub 2016 Jun 3.
A Gram-stain-negative, facultatively anaerobic, rod-shaped and motile strain, designated PAMC 28425T, was isolated from a sea surface microlayer sample from the Ross Sea, Antarctica. Analysis of the 16S rRNA gene sequence of strain PAMC 28425T showed an affiliation with the genus Pseudoalteromonas. Phylogenetic analyses revealed that strain PAMC 28425T formed a clade with Pseudoalteromonas prydzensis MB8-11T and Pseudoalteromonas mariniglutinosaKMM 3635T with 16S rRNA gene sequence similarities of 98.3-98.6 %. Genomic relatedness analyses based on the average nucleotide identity and the genome-to-genome distance showed that strain PAMC 28425T is clearly distinguished from the phylogenetically close relatives. Cells of strain PAMC 28425T grew optimally at 25 °C and pH 7.5-8.5 in the presence of 1.0-3.0 % (w/v) sea salts. The major cellular fatty acids (>10 %) were C16 : 1ω6c and/or C16 : 1ω7c, C16 : 0, and C18 : 1ω6c and/or C18 : 1ω7c. The genomic DNA G+C content was 39.7 mol%. On the basis of the phylogenetic, genomic, chemotaxonomic and phenotypic data presented, we propose the name Pseudoalteromonas neustonica sp. nov. with the type strain PAMC 28425T (=KCCM 43187T=JCM 31286T).
从南极罗斯海的海面微层样本中分离出一株革兰氏染色阴性、兼性厌氧、杆状且具运动性的菌株,命名为PAMC 28425T。对菌株PAMC 28425T的16S rRNA基因序列分析表明,它与假交替单胞菌属相关。系统发育分析显示,菌株PAMC 28425T与普里兹假交替单胞菌MB8 - 11T和海粘假交替单胞菌KMM 3635T形成一个分支,16S rRNA基因序列相似度为98.3 - 98.6%。基于平均核苷酸同一性和基因组到基因组距离的基因组相关性分析表明,菌株PAMC 28425T与系统发育关系相近的亲缘种明显不同。菌株PAMC 28425T的细胞在25°C、pH 7.5 - 8.5以及1.0 - 3.0%(w/v)海盐存在的条件下生长最佳。主要细胞脂肪酸(>10%)为C16 : 1ω6c和/或C16 : 1ω7c、C16 : 0以及C18 : 1ω6c和/或C18 : 1ω7c。基因组DNA的G + C含量为39.7 mol%。基于所提供的系统发育、基因组、化学分类和表型数据,我们提出将该菌株命名为海洋假交替单胞菌新种(Pseudoalteromonas neustonica sp. nov.),模式菌株为PAMC 28425T(=KCCM 43187T=JCM 31286T)。