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枯草芽孢杆菌的染色体分离遵循整体线性运动模式,并且对细胞周期扰动具有高度的鲁棒性。

Chromosome Segregation in Bacillus subtilis Follows an Overall Pattern of Linear Movement and Is Highly Robust against Cell Cycle Perturbations.

机构信息

SYNMIKRO, LOEWE Center for Synthetic Microbiology, Philipps Universität Marburg, Marburg, Germany.

Department of Chemistry, Philipps Universität Marburg, Marburg, Germany.

出版信息

mSphere. 2020 Jun 17;5(3):e00255-20. doi: 10.1128/mSphere.00255-20.

Abstract

Although several proteins have been identified that facilitate chromosome segregation in bacteria, no clear analogue of the mitotic machinery in eukaryotic cells has been identified. In order to investigate if recognizable patterns of segregation exist during the cell cycle, we tracked the segregation of duplicated origin regions in for 60 min in the fastest practically achievable resolution, achieving 10-s intervals. We found that while separation occurred in random patterns, often including backwards movement, overall, segregation of loci near the origins of replication was linear for the entire cell cycle. Thus, the process of partitioning can be best described as directed motion. Simulations with entropy-driven separation of polymers synthesized by two polymerases show sudden bursts of movement and segregation patterns compatible with the observed patterns, showing that for , segregation patterns can be modeled based on entropic forces. To test if obstacles for replication forks lead to an alteration of the partitioning pattern, we challenged cells with chemicals inducing DNA damage or blocking of topoisomerase activity. Both treatments led to a moderate slowing down of separation, but linear segregation was retained, showing that chromosome segregation is highly robust against cell cycle perturbation. We have followed the segregation of origin regions on the chromosome in the fastest practically achievable temporal manner, for a large fraction of the cell cycle. We show that segregation occurred in highly variable patterns but overall in an almost linear manner throughout the cell cycle. Segregation was slowed down, but not arrested, by treatment of cells that led to transient blocks in DNA replication, showing that segregation is highly robust against cell cycle perturbation. Computer simulations based on entropy-driven separation of newly synthesized DNA polymers can recapitulate sudden bursts of movement and segregation patterns compatible with the observed patterns, indicating that for , segregation patterns may include entropic forces helping to separate chromosomes during the cell cycle.

摘要

尽管已经鉴定出几种有助于细菌染色体分离的蛋白质,但尚未鉴定出与真核细胞有丝分裂机制明显相似的蛋白质。为了研究在细胞周期中是否存在可识别的分离模式,我们以最快的实际可行的分辨率跟踪了在 中复制原点区域的分离,在 60 分钟内实现了 10 秒的间隔。我们发现,虽然分离是随机发生的,通常包括向后移动,但总体而言,复制原点附近的位点的分离在整个细胞周期中是线性的。因此,分区过程可以最好地描述为定向运动。使用由两个聚合酶合成的聚合物的熵驱动分离的模拟显示,运动和分离模式的突然爆发与观察到的 模式兼容,表明对于 ,可以基于熵力对分离模式进行建模。为了测试复制叉的障碍物是否会导致分区模式的改变,我们用诱导 DNA 损伤或拓扑异构酶活性阻断的化学物质挑战细胞。这两种处理都导致分离的适度减速,但线性分离得以保留,表明染色体分离对细胞周期扰动具有高度鲁棒性。我们以最快的实际可行的时间方式,在细胞周期的很大一部分时间内,跟踪了 染色体上的原点区域的分离。我们表明,分离发生在高度可变的模式中,但总体上在整个细胞周期中以几乎线性的方式发生。通过处理导致 DNA 复制瞬时阻断的细胞,分离速度减慢,但未停止,表明分离对细胞周期扰动具有高度鲁棒性。基于新合成 DNA 聚合物的熵驱动分离的计算机模拟可以再现与观察到的 模式兼容的突然爆发的运动和分离模式,表明对于 ,分离模式可能包括有助于在细胞周期中分离染色体的熵力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b0b8/7300352/ab3c1f9edff6/mSphere.00255-20-f0001.jpg

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