Choudhary Anirudh, Wu Hang, Tong Li, Wang May D
Georgia Institute of Technology Atlanta, GA.
Georgia Institute of Technology and Emory University Atlanta, GA.
ACM BCB. 2019 Sep;2019:466-474. doi: 10.1145/3307339.3342170.
Stain normalization is a crucial pre-processing step for histopathological image processing, and can help improve the accuracy of downstream tasks such as segmentation and classification. To evaluate the effectiveness of stain normalization methods, various metrics based on color-perceptual similarity and stain color evaluation have been proposed. However, there still exists a huge gap between metric evaluation and human perception, given the limited explainability power of existing metrics and inability to combine color and semantic information efficiently. Inspired by the effectiveness of deep neural networks in evaluating perceptual similarity of natural images, in this paper, we propose TriNet-P, a color-perceptual similarity metric for whole slide images, based on deep metric embeddings. We evaluate the proposed approach using four publicly available breast cancer histological datasets. The benefit of our approach is its representation efficiency of the perceptual factors associated with H&E stained images with minimal human intervention. We show that our metric can capture the semantic similarities, both at subject (patient) and laboratory levels, and leads to better performance in image retrieval and clustering tasks.
染色归一化是组织病理学图像处理的关键预处理步骤,有助于提高诸如分割和分类等下游任务的准确性。为了评估染色归一化方法的有效性,人们提出了各种基于颜色感知相似性和染色颜色评估的指标。然而,鉴于现有指标的解释能力有限且无法有效结合颜色和语义信息,指标评估与人类感知之间仍然存在巨大差距。受深度神经网络在评估自然图像感知相似性方面有效性的启发,在本文中,我们基于深度度量嵌入提出了TriNet-P,一种用于全切片图像的颜色感知相似性指标。我们使用四个公开可用的乳腺癌组织学数据集对所提出的方法进行评估。我们方法的优势在于其在最少人工干预的情况下对与苏木精-伊红(H&E)染色图像相关的感知因素的表示效率。我们表明,我们的指标能够在个体(患者)和实验室层面捕捉语义相似性,并在图像检索和聚类任务中带来更好的性能。