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一种改良的定量实时聚合酶链反应技术,用于检测胃组织中的幽门螺杆菌及其在临床精准检测中的应用价值。

An improved quantitative real-time polymerase chain reaction technology for Helicobacter pylori detection in stomach tissue and its application value in clinical precision testing.

机构信息

Department of Clinical Microbiology and Immunology, Faculty of Pharmacy and Medical Laboratory Sciences, Third Military Medical University (Army Medical University), No. 30 Gaotanyan Street, Chongqing, 400038, People's Republic of China.

Department of Digestive Disease Center, The Third Affiliated Hospital of Chongqing Medical University (General Hospital), Chongqing, China.

出版信息

BMC Biotechnol. 2020 Jun 22;20(1):33. doi: 10.1186/s12896-020-00624-z.

DOI:10.1186/s12896-020-00624-z
PMID:32571272
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7310109/
Abstract

BACKGROUND

Helicobacter pylori (H. pylori) infection is a serious human health threat. The empiric H. pylori treatment paradigm guided by traditional testing technologies has led to antibiotic resistance. Here, we improved the qPCR method to provide technical support for precision H. pylori diagnosis and treatment.

METHODS

Two pairs of primers and probes targeting the glmM gene were designed to detect H. pylori, and a multiplex qPCR method was established for virulence factor detection. Then, a rapid urease test (RUT), culturing and qPCR were performed on 141 specimens collected from Xinqiao Hospital of China in 2017 to evaluate the qPCR detection capability. Finally, the H. pylori infectious amount and virulence genes were detected by qPCR.

RESULTS

  1. The improved qPCR method which used two pairs of primers had a higher detection rate (100%) and better accuracy (p = 0.000), compared with the qPCR using a pair of primers. It also had better consistency with the bacterial culture than with RUT (Kappa =0.440, p < 0.001). 2. The H. pylori infectious amount was significantly positively associated with gastritis in corpus (p = 0.003) and gastric erosion (p = 0.043). The H. pylori infectious amount in gastric precancerous patients was significantly lower than that in H. pylori-positive patients (p < 0.05), and the infectious H. pylori-vacA s1+ amount was significantly greater than that of H. pylori-vacA s1- (p < 0.05). 3. The vacA s1 frequency was significantly higher than that of vacA m1/cagA+/babA2+ in chronic superficial gastritis (p = 0.000), peptic ulcer (p = 0.037) and gastric erosion (p = 0.009). The H. pylori-vacA+/cagA+/babA2+ frequency showed a significant positive correlation (p < 0.05).

CONCLUSIONS

The H. pylori infectious amount and presence of H. pylori virulence factors showed complex correlations with gastric disease occurrence and development. The improved qPCR with good detection performance can be used for quantitative H. pylori detection and testing for the virulence genes vacA s1, vacA m1, cagA and babA2 simultaneously. These findings will provide valuable information for disease diagnosis and treatment.

摘要

背景

幽门螺杆菌(H. pylori)感染是严重的人类健康威胁。传统检测技术指导的经验性 H. pylori 治疗范式导致了抗生素耐药性。在这里,我们改进了 qPCR 方法,为精准 H. pylori 诊断和治疗提供技术支持。

方法

设计了针对 glmM 基因的两对引物和探针,建立了用于检测毒力因子的多重 qPCR 方法。然后,对 2017 年新桥医院采集的 141 份标本进行快速尿素酶试验(RUT)、培养和 qPCR,评估 qPCR 检测能力。最后,通过 qPCR 检测 H. pylori 感染量和毒力基因。

结果

  1. 与使用一对引物的 qPCR 相比,使用两对引物的改良 qPCR 方法具有更高的检测率(100%)和更好的准确性(p=0.000),与细菌培养的一致性也优于 RUT(Kappa=0.440,p<0.001)。2. H. pylori 感染量与胃体胃炎(p=0.003)和胃黏膜糜烂(p=0.043)呈显著正相关。胃癌前病变患者的 H. pylori 感染量明显低于 H. pylori 阳性患者(p<0.05),感染性 H. pylori-vacA s1+量明显大于 H. pylori-vacA s1-(p<0.05)。3. 在慢性浅表性胃炎(p=0.000)、消化性溃疡(p=0.037)和胃黏膜糜烂(p=0.009)中,vacA s1 频率明显高于 vacA m1/cagA+/babA2+。H. pylori-vacA+/cagA+/babA2+ 频率呈显著正相关(p<0.05)。

结论

H. pylori 感染量和毒力因子的存在与胃疾病的发生和发展呈复杂的相关性。具有良好检测性能的改良 qPCR 可用于定量检测 H. pylori 并同时检测毒力基因 vacA s1、vacA m1、cagA 和 babA2。这些发现将为疾病诊断和治疗提供有价值的信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6187/7310109/ce6217284a1d/12896_2020_624_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6187/7310109/ce6217284a1d/12896_2020_624_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6187/7310109/ce6217284a1d/12896_2020_624_Fig1_HTML.jpg

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