Lyu Lina, Zhi Bin, Lai Qiliang, Shao Zongze, Yu Zhiqiang
Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of PR China; State Key Laboratory Breeding Base of Marine Genetic Resources; Fujian Key Laboratory of Marine Genetic Resources, Xiamen 361005, PR China.
State Key Laboratory of Organic Geochemistry, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, PR China.
Int J Syst Evol Microbiol. 2020 Jul;70(7):4285-4290. doi: 10.1099/ijsem.0.004284.
Strain 12-3 was isolated from seawater of the Guanyinshan Coast, Xiamen, Fujian Province, PR China. The bacterium was Gram-stain-negative, rod-shaped, aerobic, oxidase-positive and catalase-negative. Growth of strain 12-3 occurred at 10-37 °C (optimum, 20-30 °C), at pH 5.0-11.0 (optimum, pH 7.0-8.0) and at a salinity range of 0-10 % (optimum, 3-5 %). The results of phylogenetic analysis based on its 16S rRNA gene sequence indicated that strain 12-3 belonged to the genus and had the highest sequence similarity to HDM-25 (97.4 %), followed by SW-3 (96.9 %), MJ17 (96.9 %), F14 (96.8 %) and other species in the genus (95.3-96.5 %). The average nucleotide identity (ANI) and DNA-DNA hybridization (DDH) values between strain 12-3 and HDM-25 were 76.1 and 17.0 %, respectively. ANI and DDH values between strain 12-3 and SW-3 were 78.9 and 18.2 %, respectively. The principal fatty acid of strain 12-3 was summed feature 8 (C 6/7) and C. The respiratory quinone of strain 12-3 was Q10. The polar lipids included phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and an unidentified glycolipid. The G+C content of the chromosomal DNA was 63.9 mol%. The combination of the results of the phylogenetic, phenotypic and chemotaxonomic analyses, and its low ANI and DDH values indicate that strain 12-3 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is 12-3 (=MCCC 1A16381=KCTC 72687).
菌株12 - 3从中国福建省厦门市观音山海岸的海水中分离得到。该菌革兰氏染色阴性,呈杆状,好氧,氧化酶阳性,过氧化氢酶阴性。菌株12 - 3在10 - 37 °C(最适温度为20 - 30 °C)、pH 5.0 - 11.0(最适pH为7.0 - 8.0)和盐度范围0 - 10 %(最适盐度为3 - 5 %)的条件下生长。基于其16S rRNA基因序列的系统发育分析结果表明,菌株12 - 3属于该属,与HDM - 25的序列相似性最高(97.4 %),其次是SW - 3(96.9 %)、MJ17(96.9 %)、F14(96.8 %)以及该属的其他物种(95.3 - 96.5 %)。菌株12 - 3与HDM - 25之间的平均核苷酸同一性(ANI)和DNA - DNA杂交(DDH)值分别为76.1和17.0 %。菌株12 - 3与SW - 3之间的ANI和DDH值分别为78.9和18.2 %。菌株12 - 3的主要脂肪酸为特征性总和8(C 6/7)和C。菌株12 - 3的呼吸醌为Q10。极性脂质包括磷脂酰胆碱、磷脂酰乙醇胺、磷脂酰甘油、二磷脂酰甘油和一种未鉴定的糖脂。染色体DNA的G + C含量为63.9 mol%。系统发育、表型和化学分类分析结果的综合,以及其较低的ANI和DDH值表明,菌株12 - 3代表该属的一个新物种,为此提出新物种名为sp. nov.。模式菌株为12 - 3(=MCCC 1A16381 = KCTC 7,2687)。