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新种,从厦门的海水中分离得到。

sp. nov., isolated from seawater on the Xiamen.

作者信息

Lyu Lina, Zhi Bin, Lai Qiliang, Shao Zongze, Yu Zhiqiang

机构信息

Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of PR China; State Key Laboratory Breeding Base of Marine Genetic Resources; Fujian Key Laboratory of Marine Genetic Resources, Xiamen 361005, PR China.

State Key Laboratory of Organic Geochemistry, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, PR China.

出版信息

Int J Syst Evol Microbiol. 2020 Jul;70(7):4285-4290. doi: 10.1099/ijsem.0.004284.

Abstract

Strain 12-3 was isolated from seawater of the Guanyinshan Coast, Xiamen, Fujian Province, PR China. The bacterium was Gram-stain-negative, rod-shaped, aerobic, oxidase-positive and catalase-negative. Growth of strain 12-3 occurred at 10-37 °C (optimum, 20-30 °C), at pH 5.0-11.0 (optimum, pH 7.0-8.0) and at a salinity range of 0-10 % (optimum, 3-5 %). The results of phylogenetic analysis based on its 16S rRNA gene sequence indicated that strain 12-3 belonged to the genus and had the highest sequence similarity to HDM-25 (97.4 %), followed by SW-3 (96.9 %), MJ17 (96.9 %), F14 (96.8 %) and other species in the genus (95.3-96.5 %). The average nucleotide identity (ANI) and DNA-DNA hybridization (DDH) values between strain 12-3 and HDM-25 were 76.1 and 17.0 %, respectively. ANI and DDH values between strain 12-3 and SW-3 were 78.9 and 18.2 %, respectively. The principal fatty acid of strain 12-3 was summed feature 8 (C 6/7) and C. The respiratory quinone of strain 12-3 was Q10. The polar lipids included phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and an unidentified glycolipid. The G+C content of the chromosomal DNA was 63.9 mol%. The combination of the results of the phylogenetic, phenotypic and chemotaxonomic analyses, and its low ANI and DDH values indicate that strain 12-3 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is 12-3 (=MCCC 1A16381=KCTC 72687).

摘要

菌株12 - 3从中国福建省厦门市观音山海岸的海水中分离得到。该菌革兰氏染色阴性,呈杆状,好氧,氧化酶阳性,过氧化氢酶阴性。菌株12 - 3在10 - 37 °C(最适温度为20 - 30 °C)、pH 5.0 - 11.0(最适pH为7.0 - 8.0)和盐度范围0 - 10 %(最适盐度为3 - 5 %)的条件下生长。基于其16S rRNA基因序列的系统发育分析结果表明,菌株12 - 3属于该属,与HDM - 25的序列相似性最高(97.4 %),其次是SW - 3(96.9 %)、MJ17(96.9 %)、F14(96.8 %)以及该属的其他物种(95.3 - 96.5 %)。菌株12 - 3与HDM - 25之间的平均核苷酸同一性(ANI)和DNA - DNA杂交(DDH)值分别为76.1和17.0 %。菌株12 - 3与SW - 3之间的ANI和DDH值分别为78.9和18.2 %。菌株12 - 3的主要脂肪酸为特征性总和8(C 6/7)和C。菌株12 - 3的呼吸醌为Q10。极性脂质包括磷脂酰胆碱、磷脂酰乙醇胺、磷脂酰甘油、二磷脂酰甘油和一种未鉴定的糖脂。染色体DNA的G + C含量为63.9 mol%。系统发育、表型和化学分类分析结果的综合,以及其较低的ANI和DDH值表明,菌株12 - 3代表该属的一个新物种,为此提出新物种名为sp. nov.。模式菌株为12 - 3(=MCCC 1A16381 = KCTC 7,2687)。

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