• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

嗜甲基菌属菌株C49的全基因组序列,一种携带聚羟基脂肪酸酯合成基因的甲烷氧化细菌。

Complete Genome Sequence of sp. Strain C49, a Methane-Oxidizing Bacterium Harboring Genes for Polyhydroxyalkanoate Synthesis.

作者信息

Yasuda Shohei, Suenaga Toshikazu, Terada Akihiko

机构信息

Department of Chemical Engineering, Tokyo University of Agriculture and Technology, Koganei, Tokyo, Japan.

Global Innovation Research Institute, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, Japan

出版信息

Microbiol Resour Announc. 2020 Jul 2;9(27):e00113-20. doi: 10.1128/MRA.00113-20.

DOI:10.1128/MRA.00113-20
PMID:32616630
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7330232/
Abstract

We report a complete genome sequence of sp. strain C49, a methane-oxidizing bacterium (MOB) in the class , isolated from MOB-enriched biomass. The genome encodes the functional genes for methane oxidation () and polyhydroxyalkanoate (PHA) biosynthesis (). Deciphering the genome will help research toward PHA production by MOB.

摘要

我们报道了从富含甲烷氧化菌的生物质中分离出的 纲甲烷氧化菌(MOB)—— 菌株C49的完整基因组序列。该基因组编码甲烷氧化( )和聚羟基脂肪酸酯(PHA)生物合成( )的功能基因。解析该基因组将有助于推进关于甲烷氧化菌生产聚羟基脂肪酸酯的研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa74/7330232/20fb1ed85fc9/MRA.00113-20-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa74/7330232/20fb1ed85fc9/MRA.00113-20-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa74/7330232/20fb1ed85fc9/MRA.00113-20-f0001.jpg

相似文献

1
Complete Genome Sequence of sp. Strain C49, a Methane-Oxidizing Bacterium Harboring Genes for Polyhydroxyalkanoate Synthesis.嗜甲基菌属菌株C49的全基因组序列,一种携带聚羟基脂肪酸酯合成基因的甲烷氧化细菌。
Microbiol Resour Announc. 2020 Jul 2;9(27):e00113-20. doi: 10.1128/MRA.00113-20.
2
Molecular phylogeny of type II methane-oxidizing bacteria isolated from various environments.从不同环境中分离出的II型甲烷氧化细菌的分子系统发育
Microbiology (Reading). 2002 Sep;148(Pt 9):2831-2846. doi: 10.1099/00221287-148-9-2831.
3
Methane-oxidizing bacteria in a Finnish raised mire complex: effects of site fertility and drainage.芬兰高位泥炭沼泽复合体中的甲烷氧化细菌:立地肥力和排水的影响。
Microb Ecol. 2005 Oct;50(3):429-39. doi: 10.1007/s00248-005-9219-x.
4
Methylocella palustris gen. nov., sp. nov., a new methane-oxidizing acidophilic bacterium from peat bogs, representing a novel subtype of serine-pathway methanotrophs.沼泽甲基氧化菌属,新属,新种,一种来自泥炭沼泽的新型嗜酸甲烷氧化细菌,代表丝氨酸途径甲烷营养菌的一个新亚型。
Int J Syst Evol Microbiol. 2000 May;50 Pt 3:955-969. doi: 10.1099/00207713-50-3-955.
5
Aerobic and nitrite-dependent methane-oxidizing microorganisms in sediments of freshwater lakes on the Yunnan Plateau.云南高原淡水湖泊沉积物中的好氧和亚硝酸盐依赖型甲烷氧化微生物。
Appl Microbiol Biotechnol. 2015 Mar;99(5):2371-81. doi: 10.1007/s00253-014-6141-5. Epub 2014 Oct 22.
6
Screening methane-oxidizing bacteria from municipal solid waste landfills and simulating their effects on methane and ammonia reduction.从城市固体废物填埋场筛选甲烷氧化菌并模拟其对甲烷和氨减排的影响。
Environ Sci Pollut Res Int. 2019 Dec;26(36):37082-37091. doi: 10.1007/s11356-019-06545-5. Epub 2019 Nov 19.
7
Isolation and characterization of Bacillus sp. INT005 accumulating polyhydroxyalkanoate (PHA) from gas field soil.从气田土壤中分离并鉴定出积累聚羟基脂肪酸酯(PHA)的芽孢杆菌属INT005。
J Biosci Bioeng. 2003;95(1):77-81. doi: 10.1016/S1389-1723(03)80152-4.
8
Polyhydroxyalkanoate production by a novel bacterium Massilia sp. UMI-21 isolated from seaweed, and molecular cloning of its polyhydroxyalkanoate synthase gene.从海藻中分离出的新型细菌马赛菌属UMI-21合成聚羟基脂肪酸酯及其聚羟基脂肪酸酯合酶基因的分子克隆
J Biosci Bioeng. 2014 Nov;118(5):514-9. doi: 10.1016/j.jbiosc.2014.04.022. Epub 2014 Jun 3.
9
Sucrose supplementation suppressed the growth inhibition in polyhydroxyalkanoate-producing plants.补充蔗糖可抑制聚羟基脂肪酸酯生产植物中的生长抑制。
Plant Biotechnol (Tokyo). 2017;34(1):39-43. doi: 10.5511/plantbiotechnology.16.1121a. Epub 2017 Feb 14.
10
Complete genome sequence of thiosulfate-oxidizing Bosea sp. strain PAMC26642 isolated from an Arctic lichen.从北极地衣中分离得到的硫代硫酸盐氧化博斯氏菌属菌株PAMC26642的全基因组序列
J Biotechnol. 2016 Apr 10;223:38-9. doi: 10.1016/j.jbiotec.2016.02.033. Epub 2016 Feb 26.

引用本文的文献

1
Quest for Nitrous Oxide-reducing Bacteria Present in an Anammox Biofilm Fed with Nitrous Oxide.探寻在以一氧化二氮为食的厌氧氨氧化生物膜中存在的氧化亚氮还原菌。
Microbes Environ. 2024;39(1). doi: 10.1264/jsme2.ME23106.
2
Complete genome sequence of strain SH125, a non-denitrifying nitrous oxide-reducing bacterium isolated from anammox biomass.从厌氧氨氧化生物量中分离出的非反硝化氧化亚氮还原细菌SH125菌株的全基因组序列
Microbiol Resour Announc. 2024 Mar 12;13(3):e0127923. doi: 10.1128/mra.01279-23. Epub 2024 Feb 22.

本文引用的文献

1
Exploration and enrichment of methane-oxidizing bacteria derived from a rice paddy field emitting highly concentrated methane.从高浓度甲烷排放稻田中分离的甲烷氧化菌的探索和富集。
J Biosci Bioeng. 2020 Sep;130(3):311-318. doi: 10.1016/j.jbiosc.2020.04.006. Epub 2020 May 30.
2
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold.KOFA-MKOALA:基于轮廓 HMM 和自适应得分阈值的 KEGG 直系同源物分配。
Bioinformatics. 2020 Apr 1;36(7):2251-2252. doi: 10.1093/bioinformatics/btz859.
3
Performance of neural network basecalling tools for Oxford Nanopore sequencing.
基于神经网络的牛津纳米孔测序碱基调用工具的性能。
Genome Biol. 2019 Jun 24;20(1):129. doi: 10.1186/s13059-019-1727-y.
4
NanoPack: visualizing and processing long-read sequencing data.NanoPack:可视化和处理长读测序数据。
Bioinformatics. 2018 Aug 1;34(15):2666-2669. doi: 10.1093/bioinformatics/bty149.
5
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器:从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
6
DFAST and DAGA: web-based integrated genome annotation tools and resources.DFAST和DAGA:基于网络的综合基因组注释工具与资源。
Biosci Microbiota Food Health. 2016;35(4):173-184. doi: 10.12938/bmfh.16-003. Epub 2016 Jul 14.
7
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.BUSCO:利用单拷贝同源基因评估基因组组装和注释的完整性。
Bioinformatics. 2015 Oct 1;31(19):3210-2. doi: 10.1093/bioinformatics/btv351. Epub 2015 Jun 9.
8
Miniaturized extinction culturing is the preferred strategy for rapid isolation of fast-growing methane-oxidizing bacteria.微型灭绝培养是快速分离生长迅速的甲烷氧化菌的首选策略。
Microb Biotechnol. 2012 May;5(3):368-78. doi: 10.1111/j.1751-7915.2011.00314.x. Epub 2011 Nov 10.
9
Poly-3-hydroxybutyrate metabolism in the type II methanotroph Methylocystis parvus OBBP.Ⅱ型甲烷营养菌 Methylocystis parvus OBBP 中的聚-3-羟基丁酸代谢。
Appl Environ Microbiol. 2011 Sep;77(17):6012-9. doi: 10.1128/AEM.00509-11. Epub 2011 Jul 1.
10
KEGG: kyoto encyclopedia of genes and genomes.京都基因与基因组百科全书(KEGG)
Nucleic Acids Res. 2000 Jan 1;28(1):27-30. doi: 10.1093/nar/28.1.27.