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鞘脂代谢途径中的基因对相关系数作为乳腺癌潜在的预后生物标志物

Gene Pair Correlation Coefficients in Sphingolipid Metabolic Pathway as a Potential Prognostic Biomarker for Breast Cancer.

作者信息

Sakharkar Meena Kishore, Kaur Dhillon Sarinder, Chidambaram Saravana Babu, Essa Musthafa Mohamed, Yang Jian

机构信息

Drug Discovery and Development Research Group, College of Pharmacy and Nutrition, University of Saskatchewan, 107 Wiggins Road, Saskatoon, SK S7N 5E5, Canada.

Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur 50603, Malaysia.

出版信息

Cancers (Basel). 2020 Jul 1;12(7):1747. doi: 10.3390/cancers12071747.

DOI:10.3390/cancers12071747
PMID:32630169
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7409333/
Abstract

Complex diseases such as cancer are usually governed by dynamic and simultaneous modifications of multiple genes. Since sphingolipids are potent bioactive molecules and regulate many important pathophysiological processes such as carcinogenesis, we studied the gene pair correlations of 36 genes (31 genes in the sphingolipid metabolic pathway and 5 genes encoding the sphingosine-1-phosphate receptors) between breast cancer patients and healthy controls. It is remarkable to observe that the gene expressions were widely and strongly correlated in healthy controls but in general lost in breast cancer patients. This study suggests that gene pair correlation coefficients could be applied as a systematic and novel method for the diagnosis and prognosis of breast cancer.

摘要

诸如癌症这样的复杂疾病通常由多个基因的动态且同时发生的修饰所调控。由于鞘脂是强效生物活性分子且调控许多重要的病理生理过程,如致癌作用,我们研究了乳腺癌患者与健康对照之间36个基因(鞘脂代谢途径中的31个基因和5个编码1-磷酸鞘氨醇受体的基因)的基因对相关性。值得注意的是,在健康对照中基因表达广泛且强烈相关,但在乳腺癌患者中总体上这种相关性丧失了。这项研究表明基因对相关系数可作为一种用于乳腺癌诊断和预后的系统且新颖的方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d142/7409333/3eb7acb5701d/cancers-12-01747-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d142/7409333/499bf47ed40a/cancers-12-01747-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d142/7409333/a00c6705f308/cancers-12-01747-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d142/7409333/d85363e9b66f/cancers-12-01747-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d142/7409333/3eb7acb5701d/cancers-12-01747-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d142/7409333/499bf47ed40a/cancers-12-01747-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d142/7409333/a00c6705f308/cancers-12-01747-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d142/7409333/d85363e9b66f/cancers-12-01747-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d142/7409333/3eb7acb5701d/cancers-12-01747-g004.jpg

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Invest New Drugs. 2020 Oct;38(5):1316-1325. doi: 10.1007/s10637-020-00909-2. Epub 2020 Feb 14.
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Finding prognostic gene pairs for cancer from patient-specific gene networks.从患者特定的基因网络中寻找癌症的预后基因对。
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Beyond Synthetic Lethality: Charting the Landscape of Pairwise Gene Expression States Associated with Survival in Cancer.
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Ceramide synthase 3 affects invasion and metastasis of hepatocellular carcinoma via the gene.神经酰胺合酶 3 通过 基因影响肝癌的侵袭和转移。
Zhong Nan Da Xue Xue Bao Yi Xue Ban. 2022 May 28;47(5):588-599. doi: 10.11817/j.issn.1672-7347.2022.210477.
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Malignancy and NF-κB signalling strengthen coordination between expression of mitochondrial and nuclear-encoded oxidative phosphorylation genes.恶性肿瘤和 NF-κB 信号转导增强了线粒体和核编码氧化磷酸化基因表达之间的协调。
Genome Biol. 2021 Dec 2;22(1):328. doi: 10.1186/s13059-021-02541-6.
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Explore association of genes in PDL1/PD1 pathway to radiotherapy survival benefit based on interaction model strategy.基于交互模型策略探讨 PD-L1/PD-1 通路基因与放疗生存获益的相关性。
Radiat Oncol. 2021 Nov 18;16(1):223. doi: 10.1186/s13014-021-01951-x.
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