Zhang Peng, Zhang Zheng, Zhang Lijuan, Wang Jingjing, Wu Changsheng
State Key Laboratory of Microbial Technology, Institute of Microbial Technology, Shandong University, Qingdao 266237, PR China.
Comput Struct Biotechnol J. 2020 Jun 10;18:1383-1390. doi: 10.1016/j.csbj.2020.06.003. eCollection 2020.
Glycosyltransferases (GTs) are responsible for transferring glycosyl moieties from activated sugar donors to certain acceptors, among which the GT1 family enzymes have been known for their outstanding glycosylation capacities toward diverse natural products, such as glycolipids, flavonoids and macrolides . However, there still lacks a systematic collation of this important family members. In this minireview, all the GT1 family sequences were phylogenetically analyzed, and the grouping of GT1 proteins exhibited a taxonomic life domain-dependent pattern, revealing many untapped clades of GTs. The further phylogenetic analysis of the characterized GTs facilitated the classification of substrates coverage of GT1 family enzymes from different life domains, whereby the GTs from bacteria can tolerate a wider spectrum of chemical skeletons as substrates, showing higher promiscuity than those from other domains. Furthermore, the sequence sizes of GTs from different domains were compared to understand their different substrates selectivity. Based on the multiple sequence alignments of 28 representative GT1 enzymes with crystal structures, two critical regions located in the N-terminal of GTs were identified, which were most variable among sequences from different taxonomic domains and essential for substrates binding and/or catalysis. The key roles of these two regions were validated by enumerating the influential residues that interacted with substrates in the representative structures from bacteria and plants. The atlas for GT1 family in terms of phylogeny, substrates selectivity, sequence length, and critical motifs provides the clues for the exploration of unknown GT1s and rational engineering of known enzymes, synthesizing novel promising glycoconjugates for pharmaceutical application.
糖基转移酶(GTs)负责将糖基部分从活化的糖供体转移到特定受体,其中GT1家族酶因其对多种天然产物(如糖脂、黄酮类化合物和大环内酯类)具有出色的糖基化能力而闻名。然而,对于这个重要家族成员仍缺乏系统的整理。在本综述中,对所有GT1家族序列进行了系统发育分析,GT1蛋白的分组呈现出一种依赖于生物分类生命域的模式,揭示了许多未开发的GT进化枝。对已表征的GTs进行的进一步系统发育分析有助于对来自不同生命域的GT1家族酶的底物覆盖范围进行分类,由此细菌来源的GTs能够耐受更广泛的化学骨架作为底物,比其他域的GTs表现出更高的底物选择性。此外,还比较了来自不同域的GTs的序列大小,以了解它们不同的底物选择性。基于28种具有晶体结构的代表性GT1酶的多序列比对,确定了位于GTs N端的两个关键区域,这两个区域在来自不同生物分类域的序列中变化最大,并且对于底物结合和/或催化至关重要。通过列举在细菌和植物的代表性结构中与底物相互作用的有影响的残基,验证了这两个区域的关键作用。GT1家族在系统发育、底物选择性、序列长度和关键基序方面的图谱为探索未知的GT1s和对已知酶进行合理工程改造提供了线索,从而合成用于药物应用的新型有前景的糖缀合物。