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用于自适应光学视网膜图像中自动视锥细胞检测的空间信息卷积神经网络

SPATIALLY INFORMED CNN FOR AUTOMATED CONE DETECTION IN ADAPTIVE OPTICS RETINAL IMAGES.

作者信息

Jin Heng, Morgan Jessica I W, Gee James C, Chen Min

机构信息

School of Automation Science and Electrical Engineering, Beihang University, China.

Department of Radiology, University of Pennsylvania, USA.

出版信息

Proc IEEE Int Symp Biomed Imaging. 2020 Apr;2020:1383-1386. doi: 10.1109/isbi45749.2020.9098455. Epub 2020 May 22.

DOI:10.1109/isbi45749.2020.9098455
PMID:32647558
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7345971/
Abstract

Adaptive optics (AO) scanning laser ophthalmoscopy offers cellular level in-vivo imaging of the human cone mosaic. Existing analysis of cone photoreceptor density in AO images require accurate identification of cone cells, which is a time and labor-intensive task. Recently, several methods have been introduced for automated cone detection in AO retinal images using convolutional neural networks (CNN). However, these approaches have been limited in their ability to correctly identify cones when applied to AO images originating from different locations in the retina, due to changes to the reflectance and arrangement of the cone mosaics with eccentricity. To address these limitations, we present an adapted CNN architecture that incorporates spatial information directly into the network. Our approach, inspired by conditional generative adversarial networks, embeds the retina location from which each AO image was acquired as part of the training. Using manual cone identification as ground truth, our evaluation shows general improvement over existing approaches when detecting cones in the middle and periphery regions of the retina, but decreased performance near the fovea.

摘要

自适应光学(AO)扫描激光检眼镜可提供人视锥细胞镶嵌的细胞水平体内成像。对AO图像中视锥光感受器密度的现有分析需要准确识别视锥细胞,这是一项耗时且费力的任务。最近,已经引入了几种使用卷积神经网络(CNN)在AO视网膜图像中自动检测视锥细胞的方法。然而,由于视锥细胞镶嵌的反射率和排列随偏心率而变化,这些方法在应用于源自视网膜不同位置的AO图像时,正确识别视锥细胞的能力有限。为了解决这些限制,我们提出了一种经过改进的CNN架构,该架构将空间信息直接纳入网络。我们的方法受条件生成对抗网络的启发,将获取每个AO图像的视网膜位置作为训练的一部分进行嵌入。以手动视锥细胞识别作为基准事实,我们的评估表明,在检测视网膜中部和周边区域的视锥细胞时,与现有方法相比有总体改进,但在中央凹附近性能下降。

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本文引用的文献

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RAC-CNN: multimodal deep learning based automatic detection and classification of rod and cone photoreceptors in adaptive optics scanning light ophthalmoscope images.RAC-CNN:基于多模态深度学习的自适应光学扫描激光检眼镜图像中视杆和视锥光感受器的自动检测与分类
Biomed Opt Express. 2019 Jul 8;10(8):3815-3832. doi: 10.1364/BOE.10.003815. eCollection 2019 Aug 1.
2
A 2-Year Longitudinal Study of Normal Cone Photoreceptor Density.正常圆锥细胞密度的 2 年纵向研究。
Invest Ophthalmol Vis Sci. 2019 Apr 1;60(5):1420-1430. doi: 10.1167/iovs.18-25904.
3
Deep learning based detection of cone photoreceptors with multimodal adaptive optics scanning light ophthalmoscope images of achromatopsia.
基于深度学习利用全色盲多模态自适应光学扫描激光检眼镜图像检测视锥光感受器
Biomed Opt Express. 2018 Jul 18;9(8):3740-3756. doi: 10.1364/BOE.9.003740. eCollection 2018 Aug 1.
4
The Reliability of Cone Density Measurements in the Presence of Rods.在存在视杆细胞的情况下视锥细胞密度测量的可靠性
Transl Vis Sci Technol. 2018 Jun 22;7(3):21. doi: 10.1167/tvst.7.3.21. eCollection 2018 Jun.
5
Open source software for automatic detection of cone photoreceptors in adaptive optics ophthalmoscopy using convolutional neural networks.使用卷积神经网络的自适应光学眼底镜中锥光感受器自动检测的开源软件。
Sci Rep. 2017 Jul 26;7(1):6620. doi: 10.1038/s41598-017-07103-0.
6
In vivo imaging of human cone photoreceptor inner segments.人眼视锥细胞内节的活体成像。
Invest Ophthalmol Vis Sci. 2014 Jun 6;55(7):4244-51. doi: 10.1167/iovs.14-14542.
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Noninvasive imaging of the human rod photoreceptor mosaic using a confocal adaptive optics scanning ophthalmoscope.使用共焦自适应光学扫描检眼镜对人类视杆光感受器镶嵌进行无创成像。
Biomed Opt Express. 2011 Jul 1;2(7):1864-76. doi: 10.1364/BOE.2.001864. Epub 2011 Jun 8.