The Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN 37232, USA; Department of Pediatrics, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
The Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Cell Rep. 2020 Jul 14;32(2):107882. doi: 10.1016/j.celrep.2020.107882.
The collection of T cell receptors (TCRs) generated by somatic recombination is large but unknown. We generate large TCR repertoire datasets as a resource to facilitate detailed studies of the role of TCR clonotypes and repertoires in health and disease. We estimate the size of individual human recombined and expressed TCRs by sequence analysis and determine the extent of sharing between individual repertoires. Our experiments reveal that each blood sample contains between 5 million and 21 million TCR clonotypes. Three individuals share 8% of TCRβ- or 11% of TCRα-chain clonotypes. Sorting by T cell phenotypes in four individuals shows that 5% of naive CD4+ and 3.5% of naive CD8+ subsets share their TCRβ clonotypes, whereas memory CD4+ and CD8+ subsets share 2.3% and 0.4% of their clonotypes, respectively. We identify the sequences of these shared TCR clonotypes that are of interest for studies of human T cell biology.
我们通过序列分析来估计个体重组和表达的 TCR 的大小,并确定个体 repertoire 之间的共享程度。我们的实验表明,每个血液样本含有 500 万至 2100 万个 TCR 克隆型。三个人共享 8%的 TCRβ 或 11%的 TCRα 链克隆型。在四个人中按 T 细胞表型进行排序表明,5%的幼稚 CD4+和 3.5%的幼稚 CD8+亚群共享其 TCRβ 克隆型,而记忆 CD4+和 CD8+亚群分别共享 2.3%和 0.4%的克隆型。我们鉴定了这些共享 TCR 克隆型的序列,这些序列对研究人类 T 细胞生物学很有意义。