Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.
Center for HIV/AIDS Vaccine Immunology and Immunogen Discovery, The Scripps Research Institute, La Jolla, CA, USA.
Nature. 2019 Feb;566(7744):393-397. doi: 10.1038/s41586-019-0879-y. Epub 2019 Jan 21.
In principle, humans can produce an antibody response to any non-self-antigen molecule in the appropriate context. This flexibility is achieved by the presence of a large repertoire of naive antibodies, the diversity of which is expanded by somatic hypermutation following antigen exposure. The diversity of the naive antibody repertoire in humans is estimated to be at least 10 unique antibodies. Because the number of peripheral blood B cells in a healthy adult human is on the order of 5 × 10, the circulating B cell population samples only a small fraction of this diversity. Full-scale analyses of human antibody repertoires have been prohibitively difficult, primarily owing to their massive size. The amount of information encoded by all of the rearranged antibody and T cell receptor genes in one person-the 'genome' of the adaptive immune system-exceeds the size of the human genome by more than four orders of magnitude. Furthermore, because much of the B lymphocyte population is localized in organs or tissues that cannot be comprehensively sampled from living subjects, human repertoire studies have focused on circulating B cells. Here we examine the circulating B cell populations of ten human subjects and present what is, to our knowledge, the largest single collection of adaptive immune receptor sequences described to date, comprising almost 3 billion antibody heavy-chain sequences. This dataset enables genetic study of the baseline human antibody repertoire at an unprecedented depth and granularity, which reveals largely unique repertoires for each individual studied, a subpopulation of universally shared antibody clonotypes, and an exceptional overall diversity of the antibody repertoire.
原则上,人类可以在适当的环境下对任何非自身抗原分子产生抗体反应。这种灵活性是通过存在大量的幼稚抗体库来实现的,其多样性在抗原暴露后通过体细胞超突变来扩展。人类幼稚抗体库的多样性估计至少有 10 种独特的抗体。因为健康成年人外周血 B 细胞的数量约为 5×10,所以循环 B 细胞群体仅能代表这种多样性的一小部分。对人类抗体库的全面分析一直非常困难,主要是因为其规模庞大。一个人所有重排的抗体和 T 细胞受体基因的信息量——适应性免疫系统的“基因组”——超过人类基因组的四个数量级以上。此外,由于大部分 B 淋巴细胞群位于无法从活体全面取样的器官或组织中,因此人类的受体库研究集中在循环 B 细胞上。在这里,我们检查了 10 个人的循环 B 细胞群体,并展示了迄今为止描述的最大的适应性免疫受体序列单一集合,其中包含近 30 亿个抗体重链序列。该数据集使我们能够以前所未有的深度和粒度对人类抗体库的基线进行遗传研究,揭示了每个个体的抗体库具有很大的独特性,存在普遍共享的抗体克隆型亚群,以及抗体库的整体多样性非常出色。