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协同底物共喂养刺激还原代谢。

Synergistic substrate cofeeding stimulates reductive metabolism.

机构信息

Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.

Department of Chemical and Biomolecular Engineering, University of California, Los Angeles, Los Angeles, CA, USA.

出版信息

Nat Metab. 2019 Jun;1(6):643-651. doi: 10.1038/s42255-019-0077-0. Epub 2019 Jun 14.

Abstract

Advanced bioproduct synthesis via reductive metabolism requires coordinating carbons, ATP and reducing agents, which are generated with varying efficiencies depending on metabolic pathways. Substrate mixtures with direct access to multiple pathways may optimally satisfy these biosynthetic requirements. However, native regulation favouring preferential use precludes cells from co-metabolizing multiple substrates. Here we explore mixed substrate metabolism and tailor pathway usage to synergistically stimulate carbon reduction. By controlled cofeeding of superior ATP and NADPH generators as 'dopant' substrates to cells primarily using inferior substrates, we circumvent catabolite repression and drive synergy in two divergent organisms. Glucose doping in Moorella thermoacetica stimulates CO reduction (2.3 g gCDW h) into acetate by augmenting ATP synthesis via pyruvate kinase. Gluconate doping in Yarrowia lipolytica accelerates acetate-driven lipogenesis (0.046 g gCDW h) by obligatory NADPH synthesis through the pentose cycle. Together, synergistic cofeeding produces CO-derived lipids with 38% energy yield and demonstrates the potential to convert CO into advanced bioproducts. This work advances the systems-level control of metabolic networks and CO use, the most pressing and difficult reduction challenge.

摘要

通过还原代谢途径合成先进的生物制品需要协调碳、ATP 和还原剂,这些物质的生成效率因代谢途径而异。具有多种途径直接进入的底物混合物可能最能满足这些生物合成需求。然而,有利于优先使用的天然调节使得细胞无法共代谢多种底物。在这里,我们探索了混合底物代谢,并调整途径的使用以协同刺激碳还原。通过将作为“掺杂剂”的优质 ATP 和 NADPH 生成器与主要使用劣质底物的细胞进行受控共喂养,我们规避了分解代谢物抑制作用,并在两种不同的生物体中产生协同作用。在嗜热醋杆菌中,通过丙酮酸激酶增加 ATP 合成,葡萄糖掺杂刺激 CO 还原(2.3 g gCDW h)成乙酸盐。在解脂耶氏酵母中,通过戊糖循环强制性合成 NADPH 加速由乙酸盐驱动的脂肪生成(0.046 g gCDW h)。协同共喂养产生了具有 38%能量产率的 CO 衍生脂质,并展示了将 CO 转化为先进生物制品的潜力。这项工作推进了代谢网络和 CO 使用的系统级控制,这是最紧迫和最困难的还原挑战。

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