Nguyen Trinh Thi, Kim Yu-Kyung, Nguyen Trang Vu Thien, Kwon Junbeom, Bang Ye-Ji
Department of Microbiology and Immunology, Seoul National University College of Medicine, Seoul, 03080, Republic of Korea.
Institute of Endemic Diseases, Seoul National University Medical Research Center, Seoul, 03080, Republic of Korea.
Genes Genomics. 2025 Aug 20. doi: 10.1007/s13258-025-01668-1.
Selenomonas sputigena is an anaerobic mucosa-associated bacterium with dual roles in human health-acting as a pathobiont in periodontal disease and exhibiting protective effects in allergic airway inflammation. Despite its clinical significance, its metabolic functions and underlying mechanisms remain poorly defined.
This study aimed to systematically characterize S. sputigena's metabolic capacity and develop genetic tools for functional studies.
We reconstructed central carbon metabolic networks through in silico analysis. Growth kinetics, substrate utilization, and fermentation profiles were evaluated experimentally across five carbon sources: glucose, gluconate, glycerol, glutamate, and succinate. Expression of key metabolic genes was quantified by qRT-PCR. Native promoter constructs were developed and tested for GFP reporter expression.
Selenomonas sputigena displayed glucose-preferential growth with rapid consumption (0.70 ± 0.05 mM h⁻) and substantial acetate production (17.76 ± 2.05 mM). Gluconate and glycerol supported moderate growth, while glutamate and succinate were poorly utilized. Gene expression analysis revealed strong substrate-dependent regulation of glycolytic genes, with gap expression correlating with growth performance, while TCA cycle genes maintained constitutive basal expression. Four native promoters successfully drove reporter expression, with P demonstrating superior performance as a growth-responsive reporter.
This study establishes the first comprehensive metabolic and genetic framework for S. sputigena, revealing glucose-dependent fermentation with high acetate production that may contribute to host interactions. The validated promoter system enables future investigations of host-microbe interactions and therapeutic applications in mucosal environments.
口腔栖硒单胞菌是一种厌氧的黏膜相关细菌,在人类健康中具有双重作用——在牙周病中作为致病共生菌,在过敏性气道炎症中发挥保护作用。尽管其具有临床意义,但其代谢功能和潜在机制仍不清楚。
本研究旨在系统地表征口腔栖硒单胞菌的代谢能力,并开发用于功能研究的遗传工具。
我们通过计算机分析重建了中心碳代谢网络。在葡萄糖、葡萄糖酸盐、甘油、谷氨酸盐和琥珀酸盐这五种碳源上,通过实验评估了生长动力学、底物利用和发酵谱。通过qRT-PCR对关键代谢基因的表达进行定量。开发了天然启动子构建体并测试了绿色荧光蛋白(GFP)报告基因的表达。
口腔栖硒单胞菌表现出对葡萄糖的优先生长,葡萄糖消耗迅速(0.70±0.05 mM h⁻),乙酸盐产量可观(17.76±2.05 mM)。葡萄糖酸盐和甘油支持适度生长,而谷氨酸盐和琥珀酸盐利用不佳。基因表达分析揭示了糖酵解基因强烈的底物依赖性调控,其中gap表达与生长性能相关,而三羧酸循环基因维持组成型基础表达。四个天然启动子成功驱动了报告基因的表达,其中P作为生长响应报告基因表现出优异的性能。
本研究建立了首个口腔栖硒单胞菌的全面代谢和遗传框架,揭示了依赖葡萄糖的高乙酸盐产量发酵,这可能有助于宿主相互作用。经过验证的启动子系统为未来研究宿主-微生物相互作用以及在黏膜环境中的治疗应用提供了可能。