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揭示人类半乳糖凝集素-1识别糖链过程中构象可塑性和变构的时间尺度。

Unravelling the Time Scale of Conformational Plasticity and Allostery in Glycan Recognition by Human Galectin-1.

机构信息

Molecular Recognition and Host-Pathogen Interactions, CIC bioGUNE, Basque Research and Technology Alliance, BRTA, Bizkaia Technology Park, Building 800, 48162, Derio, Bizkaia, Spain.

Ikerbasque-Basque Foundation for Science, 48013, Bilbao, Bizkaia, Spain.

出版信息

Chemistry. 2020 Dec 1;26(67):15643-15653. doi: 10.1002/chem.202003212. Epub 2020 Oct 29.

Abstract

The interaction of human galectin-1 with a variety of oligosaccharides, from di-(N-acetyllactosamine) to tetra-saccharides (blood B type-II antigen) has been scrutinized by using a combined approach of different NMR experiments, molecular dynamics (MD) simulations, and isothermal titration calorimetry. Ligand- and receptor-based NMR experiments assisted by computational methods allowed proposing three-dimensional structures for the different complexes, which explained the lack of enthalpy gain when increasing the chemical complexity of the glycan. Interestingly, and independently of the glycan ligand, the entropy term does not oppose the binding event, a rather unusual feature for protein-sugar interactions. CLEANEX-PM and relaxation dispersion experiments revealed that sugar binding affected residues far from the binding site and described significant changes in the dynamics of the protein. In particular, motions in the microsecond-millisecond timescale in residues at the protein dimer interface were identified in the presence of high affinity ligands. The dynamic process was further explored by extensive MD simulations, which provided additional support for the existence of allostery in glycan recognition by human galectin-1.

摘要

人半乳糖凝集素-1与各种寡糖(从二(N-乙酰乳糖胺)到四糖(血 B 型-II 抗原))的相互作用已通过使用各种 NMR 实验、分子动力学(MD)模拟和等温热滴定法的组合方法进行了仔细研究。配体和受体 NMR 实验辅以计算方法,提出了不同复合物的三维结构,解释了糖链化学复杂性增加时缺乏焓增益的原因。有趣的是,与糖配体无关,熵项并不反对结合事件,这对于蛋白质-糖相互作用来说是一个相当不寻常的特征。CLEANEX-PM 和弛豫弥散实验表明,糖结合会影响远离结合位点的残基,并描述了蛋白质动力学的显著变化。特别是,在存在高亲和力配体的情况下,在蛋白质二聚体界面的残基中,在微秒-毫秒时间尺度上的运动被识别出来。通过广泛的 MD 模拟进一步探索了动态过程,为人半乳糖凝集素-1识别糖的变构作用的存在提供了额外的支持。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce48/7756784/dad9de01325c/CHEM-26-15643-g001.jpg

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